#=GENOME_DIFF	1.0
#=AUTHOR	
SNP	1790	608	REL606	1612	G	aa_new_seq=S	aa_position=426	aa_ref_seq=N	codon_new_seq=AGC	codon_position=2	codon_ref_seq=AAC	gene_list=thrA	gene_name=thrA	gene_position=1277	gene_product=bifunctional aspartokinase I/homeserine dehydrogenase I	gene_strand=>	locus_tag=ECB_00002	snp_type=nonsynonymous
SNP	1791	609	REL606	9972	G	aa_new_seq=T	aa_position=174	aa_ref_seq=N	codon_new_seq=ACC	codon_position=2	codon_ref_seq=AAC	gene_list=yaaH	gene_name=yaaH	gene_position=521	gene_product=conserved inner membrane protein associated with acetate transport	gene_strand=<	locus_tag=ECB_00010	snp_type=nonsynonymous
SNP	1792	610	REL606	10563	A	gene_name=yaaH/yaaW	gene_position=intergenic (-71/+78)	gene_product=conserved inner membrane protein associated with acetate transport/hypothetical protein	locus_tag=ECB_00010/ECB_00011	snp_type=intergenic
INS	1793	615	REL606	16966	G	gene_name=mokC/nhaA	gene_position=intergenic (-8/-522)	gene_product=regulatory protein for HokC, overlaps CDS of hokC/pH-dependent sodium/proton antiporter	locus_tag=ECB_00017/ECB_00018	snp_type=intergenic
MOB	1770	59,33	REL606	16990	IS150	1	3	gene_name=mokC/nhaA	gene_position=intergenic (-32/-496)	gene_product=regulatory protein for HokC, overlaps CDS of hokC/pH-dependent sodium/proton antiporter	locus_tag=ECB_00017/ECB_00018	snp_type=intergenic
DEL	1794	618	REL606	38191	1	gene_name=carB/caiF	gene_position=intergenic (+82/-180)	gene_product=carbamoyl-phosphate synthase large subunit/DNA-binding transcriptional activator	locus_tag=ECB_00037/ECB_00038	snp_type=intergenic
SNP	1795	619	REL606	43519	G	aa_new_seq=P	aa_position=354	aa_ref_seq=L	codon_new_seq=CCG	codon_position=2	codon_ref_seq=CTG	gene_list=caiA	gene_name=caiA	gene_position=1061	gene_product=crotonobetaine reductase subunit II, FAD-binding	gene_strand=<	locus_tag=ECB_00043	snp_type=nonsynonymous
SNP	1796	620	REL606	62118	G	aa_new_seq=R	aa_position=187	aa_ref_seq=Q	codon_new_seq=CGG	codon_position=2	codon_ref_seq=CAG	gene_list=djlA	gene_name=djlA	gene_position=560	gene_product=Dna-J like membrane chaperone protein	gene_strand=>	locus_tag=ECB_00059	snp_type=nonsynonymous
INS	1797	621	REL606	66230	T	gene_name=hepA/polB	gene_position=intergenic (-162/+3)	gene_product=ATP-dependent helicase HepA/DNA polymerase II	locus_tag=ECB_00061/ECB_00062	snp_type=intergenic
SNP	1798	627	REL606	80113	G	gene_name=yabN/setA	gene_position=intergenic (-10/-312)	gene_product=DNA-binding transcriptional regulator/broad specificity sugar efflux system	locus_tag=ECB_00071/ECB_00072	snp_type=intergenic
SNP	1799	628	REL606	81158	C	aa_new_seq=A	aa_position=245	aa_ref_seq=E	codon_new_seq=GCG	codon_position=2	codon_ref_seq=GAG	gene_list=setA	gene_name=setA	gene_position=734	gene_product=broad specificity sugar efflux system	gene_strand=>	locus_tag=ECB_00072	snp_type=nonsynonymous
SNP	1800	631	REL606	104597	T	aa_new_seq=S	aa_position=343	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=murC	gene_name=murC	gene_position=1029	gene_product=UDP-N-acetylmuramate-L-alanine ligase	gene_strand=>	locus_tag=ECB_00092	snp_type=synonymous
SNP	1801	632	REL606	105581	A	aa_new_seq=*	aa_position=182	aa_ref_seq=W	codon_new_seq=TAG	codon_position=2	codon_ref_seq=TGG	gene_list=ddl	gene_name=ddl	gene_position=545	gene_product=D-alanylalanine synthetase	gene_strand=>	locus_tag=ECB_00093	snp_type=nonsynonymous
SNP	1802	633	REL606	116742	C	aa_new_seq=C	aa_position=165	aa_ref_seq=C	codon_new_seq=TGC	codon_position=3	codon_ref_seq=TGT	gene_list=guaC	gene_name=guaC	gene_position=495	gene_product=guanosine 5'-monophosphate oxidoreductase	gene_strand=>	locus_tag=ECB_00104	snp_type=synonymous
SNP	1803	634	REL606	138495	T	aa_new_seq=D	aa_position=258	aa_ref_seq=G	codon_new_seq=GAC	codon_position=2	codon_ref_seq=GGC	gene_list=speE	gene_name=speE	gene_position=773	gene_product=spermidine synthase	gene_strand=<	locus_tag=ECB_00120	snp_type=nonsynonymous
SNP	1804	636	REL606	161273	G	aa_new_seq=A	aa_position=224	aa_ref_seq=A	codon_new_seq=GCC	codon_position=3	codon_ref_seq=GCT	gene_list=pcnB	gene_name=pcnB	gene_position=672	gene_product=poly(A) polymerase I	gene_strand=<	locus_tag=ECB_00142	snp_type=synonymous
SNP	1805	638	REL606	164909	T	gene_name=ligT/hrpB	gene_position=intergenic (-27/-47)	gene_product=2'-5' RNA ligase/predicted ATP-dependent helicase	locus_tag=ECB_00146/ECB_00147	snp_type=intergenic
SNP	1806	641	REL606	175429	G	aa_new_seq=A	aa_position=376	aa_ref_seq=T	codon_new_seq=GCG	codon_position=1	codon_ref_seq=ACG	gene_list=fhuB	gene_name=fhuB	gene_position=1126	gene_product=fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components	gene_strand=>	locus_tag=ECB_00152	snp_type=nonsynonymous
SNP	1807	642	REL606	189171	T	aa_new_seq=L	aa_position=774	aa_ref_seq=L	codon_new_seq=CTA	codon_position=3	codon_ref_seq=CTG	gene_list=glnD	gene_name=glnD	gene_position=2322	gene_product=PII uridylyl-transferase	gene_strand=<	locus_tag=ECB_00165	snp_type=synonymous
SNP	1808	643	REL606	216480	T	gene_name=tilS/rof	gene_position=intergenic (+9/+40)	gene_product=tRNA(Ile)-lysidine synthetase/modulator of Rho-dependent transcription termination	locus_tag=ECB_00186/ECB_00187	snp_type=intergenic
SNP	1809	644	REL606	216601	A	aa_new_seq=G	aa_position=58	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=rof	gene_name=rof	gene_position=174	gene_product=modulator of Rho-dependent transcription termination	gene_strand=<	locus_tag=ECB_00187	snp_type=synonymous
SNP	1810	645	REL606	220338	T	aa_new_seq=T	aa_position=427	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=proS	gene_name=proS	gene_position=1279	gene_product=prolyl-tRNA synthetase	gene_strand=<	locus_tag=ECB_00193	snp_type=nonsynonymous
SNP	1811	651	REL606	235408	C	aa_new_seq=P	aa_position=187	aa_ref_seq=S	codon_new_seq=CCC	codon_position=1	codon_ref_seq=TCC	gene_list=yafE	gene_name=yafE	gene_position=559	gene_product=predicted S-adenosyl-L-methionine-dependent methyltransferase	gene_strand=>	locus_tag=ECB_00203	snp_type=nonsynonymous
DEL	1812	654	REL606	242203	1	gene_list=ECB_00212	gene_name=ECB_00212	gene_position=coding (193/372 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00212
SNP	1813	666	REL606	247796	C	aa_new_seq=G	aa_position=27	aa_ref_seq=S	codon_new_seq=GGT	codon_position=1	codon_ref_seq=AGT	gene_list=fadE	gene_name=fadE	gene_position=79	gene_product=acyl-CoA dehydrogenase	gene_strand=<	locus_tag=ECB_00216	snp_type=nonsynonymous
DEL	1814	669	REL606	273276	1	gene_list=yagU	gene_name=yagU	gene_position=coding (103/615 nt)	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_00246
SNP	1815	670	REL606	281923	T	gene_name=ykgK/ykgL	gene_position=intergenic (-406/-369)	gene_product=predicted regulator/hypothetical protein	locus_tag=ECB_00253/ECB_00254	snp_type=intergenic
SNP	1816	675	REL606	314679	T	aa_new_seq=G	aa_position=302	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=yahJ	gene_name=yahJ	gene_position=906	gene_product=deaminase	gene_strand=>	locus_tag=ECB_00279	snp_type=synonymous
INS	1817	682	REL606	352377	G	gene_name=frmR/yaiO	gene_position=intergenic (-139/+47)	gene_product=regulator protein that represses frmRAB operon/hypothetical protein	locus_tag=ECB_00311/ECB_00312	snp_type=intergenic
SNP	1818	684	REL606	357611	C	gene_name=tauD/hemB	gene_position=intergenic (+57/+50)	gene_product=taurine dioxygenase/delta-aminolevulinic acid dehydratase	locus_tag=ECB_00318/ECB_00319	snp_type=intergenic
SNP	1819	685	REL606	365839	T	aa_new_seq=C	aa_position=108	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=yaiW	gene_name=yaiW	gene_position=322	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_00325	snp_type=nonsynonymous
SNP	1820	686	REL606	371056	T	aa_new_seq=S	aa_position=44	aa_ref_seq=A	codon_new_seq=TCG	codon_position=1	codon_ref_seq=GCG	gene_list=psiF	gene_name=psiF	gene_position=130	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00331	snp_type=nonsynonymous
SNP	1821	688	REL606	393237	T	gene_list=yajB	gene_name=yajB	gene_position=pseudogene (105/192 nt)	gene_product=putative glycoprotein; b0404_2	gene_strand=<	locus_tag=ECB_00352	snp_type=pseudogene
SNP	1822	689	REL606	398061	C	aa_new_seq=A	aa_position=45	aa_ref_seq=G	codon_new_seq=GCC	codon_position=2	codon_ref_seq=GGC	gene_list=secF	gene_name=secF	gene_position=134	gene_product=protein export protein SecF	gene_strand=>	locus_tag=ECB_00357	snp_type=nonsynonymous
SNP	1823	691	REL606	426451	G	aa_new_seq=R	aa_position=205	aa_ref_seq=H	codon_new_seq=CGC	codon_position=2	codon_ref_seq=CAC	gene_list=tig	gene_name=tig	gene_position=614	gene_product=trigger factor	gene_strand=>	locus_tag=ECB_00387	snp_type=nonsynonymous
INS	1824	694	REL606	433366	T	gene_name=lon/hupB	gene_position=intergenic (+69/-140)	gene_product=DNA-binding ATP-dependent protease La/HU, DNA-binding transcriptional regulator, beta subunit	locus_tag=ECB_00391/ECB_00392	snp_type=intergenic
SNP	1825	695	REL606	447290	C	gene_name=tesB/ybaY	gene_position=intergenic (-62/-156)	gene_product=acyl-CoA thioesterase II/predicted outer membrane lipoprotein	locus_tag=ECB_00404/ECB_00405	snp_type=intergenic
INS	1826	696	REL606	451184	A	gene_list=ylaC	gene_name=ylaC	gene_position=coding (135/471 nt)	gene_product=predicted inner membrane protein	gene_strand=<	locus_tag=ECB_00409
SNP	1827	699	REL606	462346	T	gene_name=ybaM/priC	gene_position=intergenic (-8/+6)	gene_product=hypothetical protein/primosomal replication protein N''	locus_tag=ECB_00417/ECB_00418	snp_type=intergenic
SNP	1828	700	REL606	472751	T	aa_new_seq=V	aa_position=187	aa_ref_seq=A	codon_new_seq=GTC	codon_position=2	codon_ref_seq=GCC	gene_list=gsk	gene_name=gsk	gene_position=560	gene_product=inosine/guanosine kinase	gene_strand=>	locus_tag=ECB_00428	snp_type=nonsynonymous
INS	1829	701,702	REL606	473904	GC	gene_list=ybaL	gene_name=ybaL	gene_position=coding (1402/1677 nt)	gene_product=predicted transporter with NAD(P)-binding Rossmann-fold domain	gene_strand=<	locus_tag=ECB_00429
SNP	1830	705	REL606	493264	G	aa_new_seq=E	aa_position=227	aa_ref_seq=E	codon_new_seq=GAG	codon_position=3	codon_ref_seq=GAA	gene_list=ybbP	gene_name=ybbP	gene_position=681	gene_product=predicted inner membrane protein	gene_strand=>	locus_tag=ECB_00447	snp_type=synonymous
SNP	1831	715	REL606	522180	G	aa_new_seq=G	aa_position=98	aa_ref_seq=S	codon_new_seq=GGC	codon_position=1	codon_ref_seq=AGC	gene_list=ylbF	gene_name=ylbF	gene_position=292	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00470	snp_type=nonsynonymous
SNP	1832	716	REL606	545344	T	aa_new_seq=S	aa_position=28	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=rus	gene_name=rus	gene_position=84	gene_product=endonuclease RUS	gene_strand=>	locus_tag=ECB_00500	snp_type=synonymous
MOB	1771	10,51	REL606	546191	IS1	1	9	gene_list=ybcQ	gene_name=ybcQ	gene_position=coding (346-354/384 nt)	gene_product=predicted antitermination protein	gene_strand=>	locus_tag=ECB_00502
DEL	1764	719,37	REL606	547700	2651	gene_name=[nmpC]–[ybcU]	gene_product=[nmpC], ybcR, ybcS, ybcT, [ybcU]	locus_tag=[ECB_00503]–[ECB_00509]	mediated=IS1
INS	1833	721	REL606	550485	G	gene_name=ybcU/ECB_00510	gene_position=intergenic (-123/+238)	gene_product=predicted lipoprotein/conserved hypothetical protein	locus_tag=ECB_00509/ECB_00510	snp_type=intergenic
SNP	1834	722	REL606	553093	T	aa_new_seq=V	aa_position=418	aa_ref_seq=A	codon_new_seq=GTC	codon_position=2	codon_ref_seq=GCC	gene_list=ECB_00512	gene_name=ECB_00512	gene_position=1253	gene_product=putative tail component of prophage	gene_strand=>	locus_tag=ECB_00512	snp_type=nonsynonymous
SNP	1835	729	REL606	555681	G	aa_new_seq=A	aa_position=322	aa_ref_seq=A	codon_new_seq=GCG	codon_position=3	codon_ref_seq=GCA	gene_list=ECB_00513	gene_name=ECB_00513	gene_position=966	gene_product=conserved hypothetical protein	gene_strand=>	locus_tag=ECB_00513	snp_type=synonymous
SNP	1836	741	REL606	565276	T	aa_new_seq=T	aa_position=344	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=nfrA	gene_name=nfrA	gene_position=1030	gene_product=bacteriophage N4 receptor, outer membrane subunit	gene_strand=<	locus_tag=ECB_00522	snp_type=nonsynonymous
DEL	1765	772,55	REL606	581862	6633	gene_name=[cusA]–ybdK	gene_product=[cusA], pheP, ybdG, nfnB, ybdF, ybdJ, ybdK	locus_tag=[ECB_00536]–[ECB_00542]	mediated=IS150
SNP	1837	776	REL606	592510	C	aa_new_seq=A	aa_position=96	aa_ref_seq=T	codon_new_seq=GCT	codon_position=1	codon_ref_seq=ACT	gene_list=entD	gene_name=entD	gene_position=286	gene_product=phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex	gene_strand=<	locus_tag=ECB_00549	snp_type=nonsynonymous
SNP	1838	777	REL606	605580	G	aa_new_seq=L	aa_position=191	aa_ref_seq=L	codon_new_seq=CTG	codon_position=3	codon_ref_seq=CTA	gene_list=ybdA	gene_name=ybdA	gene_position=573	gene_product=predicted transporter	gene_strand=>	locus_tag=ECB_00558	snp_type=synonymous
SNP	1839	778	REL606	609346	T	aa_new_seq=F	aa_position=190	aa_ref_seq=S	codon_new_seq=TTC	codon_position=2	codon_ref_seq=TCC	gene_list=entE	gene_name=entE	gene_position=569	gene_product=2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex	gene_strand=>	locus_tag=ECB_00561	snp_type=nonsynonymous
DEL	1840	779	REL606	609892	1	gene_list=entE	gene_name=entE	gene_position=coding (1115/1611 nt)	gene_product=2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex	gene_strand=>	locus_tag=ECB_00561
SNP	1841	780	REL606	613169	T	gene_list=cstA	gene_name=cstA	gene_position=pseudogene (568/1023 nt)	gene_product=carbon starvation protein; b0598_1	gene_strand=>	locus_tag=ECB_00565	snp_type=pseudogene
AMP	1789	2	REL606	625889	2933	2	gene_name=[rnk]–[citG]	gene_product=[rnk], rna, citT, [citG]	locus_tag=[ECB_00578]–[ECB_00581]
SNP	1842	784	REL606	627610	A	aa_new_seq=I	aa_position=341	aa_ref_seq=T	codon_new_seq=ATA	codon_position=2	codon_ref_seq=ACA	gene_list=citT	gene_name=citT	gene_position=1022	gene_product=citrate:succinate antiporter	gene_strand=<	locus_tag=ECB_00580	snp_type=nonsynonymous
INS	1843	786	REL606	636299	G	gene_list=citA	gene_name=citA	gene_position=coding (1477/1659 nt)	gene_product=sensory histidine kinase in two-component regulatory system with citB	gene_strand=>	locus_tag=ECB_00589
MOB	1772	22,6	REL606	643362	IS150	1	3	gene_list=ybeF	gene_name=ybeF	gene_position=coding (598-600/954 nt)	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=<	locus_tag=ECB_00598
SNP	1844	787	REL606	648692	T	aa_new_seq=H	aa_position=69	aa_ref_seq=R	codon_new_seq=CAC	codon_position=2	codon_ref_seq=CGC	gene_list=mrdB	gene_name=mrdB	gene_position=206	gene_product=cell wall shape-determining protein	gene_strand=<	locus_tag=ECB_00603	snp_type=nonsynonymous
SNP	1845	788	REL606	662118	T	aa_new_seq=V	aa_position=354	aa_ref_seq=V	codon_new_seq=GTA	codon_position=3	codon_ref_seq=GTG	gene_list=hscC	gene_name=hscC	gene_position=1062	gene_product=Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription	gene_strand=<	locus_tag=ECB_00616	snp_type=synonymous
DEL	1846	789	REL606	664688	1	gene_name=gltL/insJ-2	gene_position=intergenic (-79/-47)	gene_product=ATP-binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein	locus_tag=ECB_00618/ECB_00619	snp_type=intergenic
SNP	1847	791	REL606	670500	T	aa_new_seq=L	aa_position=356	aa_ref_seq=S	codon_new_seq=TTG	codon_position=2	codon_ref_seq=TCG	gene_list=ECB_00624	gene_name=ECB_00624	gene_position=1067	gene_product=conserved hypothetical protein	gene_strand=>	locus_tag=ECB_00624	snp_type=nonsynonymous
INS	1848	800	REL606	679238	T	gene_name=metT/asnB	gene_position=intergenic (-11/+370)	gene_product=tRNA-Met/asparagine synthetase B	locus_tag=ECB_t00014/ECB_00631	snp_type=intergenic
SNP	1849	801	REL606	679395	T	gene_name=metT/asnB	gene_position=intergenic (-168/+213)	gene_product=tRNA-Met/asparagine synthetase B	locus_tag=ECB_t00014/ECB_00631	snp_type=intergenic
SNP	1850	802	REL606	692880	G	gene_name=fur/fldA	gene_position=intergenic (-139/+150)	gene_product=ferric uptake regulator/flavodoxin 1	locus_tag=ECB_00640/ECB_00641	snp_type=intergenic
SNP	1851	815	REL606	713566	T	aa_new_seq=L	aa_position=16	aa_ref_seq=S	codon_new_seq=TTG	codon_position=2	codon_ref_seq=TCG	gene_list=ybfB	gene_name=ybfB	gene_position=47	gene_product=predicted inner membrane protein	gene_strand=>	locus_tag=ECB_00659	snp_type=nonsynonymous
SNP	1852	838	REL606	723042	T	aa_new_seq=P	aa_position=100	aa_ref_seq=P	codon_new_seq=CCA	codon_position=3	codon_ref_seq=CCG	gene_list=ybgH	gene_name=ybgH	gene_position=300	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_00669	snp_type=synonymous
SNP	1853	839	REL606	723449	C	gene_name=ybgH/ybgI	gene_position=intergenic (-108/-163)	gene_product=predicted transporter/conserved metal-binding protein	locus_tag=ECB_00669/ECB_00670	snp_type=intergenic
SNP	1854	840	REL606	731936	G	aa_new_seq=A	aa_position=342	aa_ref_seq=V	codon_new_seq=GCT	codon_position=2	codon_ref_seq=GTT	gene_list=ybgQ	gene_name=ybgQ	gene_position=1025	gene_product=predicted outer membrane protein	gene_strand=<	locus_tag=ECB_00678	snp_type=nonsynonymous
SNP	1855	841	REL606	734488	T	aa_new_seq=T	aa_position=258	aa_ref_seq=A	codon_new_seq=ACT	codon_position=1	codon_ref_seq=GCT	gene_list=gltA	gene_name=gltA	gene_position=772	gene_product=citrate synthase	gene_strand=<	locus_tag=ECB_00680	snp_type=nonsynonymous
SNP	1856	842	REL606	734890	T	aa_new_seq=T	aa_position=124	aa_ref_seq=A	codon_new_seq=ACT	codon_position=1	codon_ref_seq=GCT	gene_list=gltA	gene_name=gltA	gene_position=370	gene_product=citrate synthase	gene_strand=<	locus_tag=ECB_00680	snp_type=nonsynonymous
SNP	1857	844	REL606	754682	T	aa_new_seq=G	aa_position=253	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=cydB	gene_name=cydB	gene_position=759	gene_product=cytochrome d terminal oxidase, subunit II	gene_strand=>	locus_tag=ECB_00693	snp_type=synonymous
SNP	1858	853	REL606	765234	G	aa_new_seq=R	aa_position=73	aa_ref_seq=R	codon_new_seq=CGC	codon_position=3	codon_ref_seq=CGT	gene_list=ybgR	gene_name=ybgR	gene_position=219	gene_product=zinc transporter ZitB	gene_strand=<	locus_tag=ECB_00705	snp_type=synonymous
SNP	1859	854	REL606	767233	T	aa_new_seq=I	aa_position=324	aa_ref_seq=I	codon_new_seq=ATT	codon_position=3	codon_ref_seq=ATC	gene_list=aroG	gene_name=aroG	gene_position=972	gene_product=3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible	gene_strand=>	locus_tag=ECB_00707	snp_type=synonymous
SNP	1860	855	REL606	767369	T	gene_name=aroG/gpmA	gene_position=intergenic (+55/+103)	gene_product=3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible/phosphoglyceromutase	locus_tag=ECB_00707/ECB_00708	snp_type=intergenic
SNP	1861	856	REL606	771216	G	aa_new_seq=A	aa_position=148	aa_ref_seq=V	codon_new_seq=GCG	codon_position=2	codon_ref_seq=GTG	gene_list=galT	gene_name=galT	gene_position=443	gene_product=galactose-1-phosphate uridylyltransferase	gene_strand=<	locus_tag=ECB_00711	snp_type=nonsynonymous
SNP	1862	857	REL606	776222	G	aa_new_seq=E	aa_position=169	aa_ref_seq=K	codon_new_seq=GAA	codon_position=1	codon_ref_seq=AAA	gene_list=modA	gene_name=modA	gene_position=505	gene_product=molybdate transporter subunit	gene_strand=>	locus_tag=ECB_00716	snp_type=nonsynonymous
SNP	1863	859	REL606	784168	G	aa_new_seq=G	aa_position=13	aa_ref_seq=S	codon_new_seq=GGT	codon_position=1	codon_ref_seq=AGT	gene_list=ybhJ	gene_name=ybhJ	gene_position=37	gene_product=predicted hydratase	gene_strand=>	locus_tag=ECB_00724	snp_type=nonsynonymous
SNP	1864	860	REL606	793309	G	aa_new_seq=S	aa_position=434	aa_ref_seq=N	codon_new_seq=AGC	codon_position=2	codon_ref_seq=AAC	gene_list=ECB_00733	gene_name=ECB_00733	gene_position=1301	gene_product=conserved hypothetical protein	gene_strand=>	locus_tag=ECB_00733	snp_type=nonsynonymous
INS	1865	861	REL606	794720	G	gene_list=ECB_00735	gene_name=ECB_00735	gene_position=coding (279/459 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00735
SNP	1866	863	REL606	804446	T	aa_new_seq=V	aa_position=100	aa_ref_seq=A	codon_new_seq=GTG	codon_position=2	codon_ref_seq=GCG	gene_list=bioC	gene_name=bioC	gene_position=299	gene_product=predicted methltransferase, enzyme of biotin synthesis	gene_strand=>	locus_tag=ECB_00744	snp_type=nonsynonymous
SNP	1867	864	REL606	817276	T	aa_new_seq=C	aa_position=8	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=ybhQ	gene_name=ybhQ	gene_position=22	gene_product=predicted inner membrane protein	gene_strand=>	locus_tag=ECB_00758	snp_type=nonsynonymous
DEL	1868	865	REL606	820839	1	gene_list=ybhF	gene_name=ybhF	gene_position=coding (768/1737 nt)	gene_product=fused predicted transporter subunits of ABC superfamily: ATP-binding components	gene_strand=<	locus_tag=ECB_00761
SNP	1869	866	REL606	821131	G	aa_new_seq=A	aa_position=159	aa_ref_seq=V	codon_new_seq=GCG	codon_position=2	codon_ref_seq=GTG	gene_list=ybhF	gene_name=ybhF	gene_position=476	gene_product=fused predicted transporter subunits of ABC superfamily: ATP-binding components	gene_strand=<	locus_tag=ECB_00761	snp_type=nonsynonymous
SNP	1870	867	REL606	828156	T	aa_new_seq=V	aa_position=95	aa_ref_seq=A	codon_new_seq=GTC	codon_position=2	codon_ref_seq=GCC	gene_list=ybiB	gene_name=ybiB	gene_position=284	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00767	snp_type=nonsynonymous
SNP	1871	868	REL606	845650	A	gene_name=ECB_00783/mntR	gene_position=intergenic (+85/-158)	gene_product=hypothetical protein/DNA-binding transcriptional regulator of mntH	locus_tag=ECB_00783/ECB_00784	snp_type=intergenic
SNP	1872	871	REL606	886370	G	aa_new_seq=G	aa_position=160	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=ECB_00825	gene_name=ECB_00825	gene_position=479	gene_product=putative replication protein for prophage	gene_strand=>	locus_tag=ECB_00825	snp_type=nonsynonymous
SNP	1873	874	REL606	894198	T	aa_new_seq=L	aa_position=184	aa_ref_seq=L	codon_new_seq=CTA	codon_position=3	codon_ref_seq=CTG	gene_list=ECB_00833	gene_name=ECB_00833	gene_position=552	gene_product=Terminase, ATPase subunit	gene_strand=<	locus_tag=ECB_00833	snp_type=synonymous
INS	1874	875	REL606	901828	G	gene_list=ECB_00845	gene_name=ECB_00845	gene_position=coding (1378/1623 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00845
SNP	1875	876	REL606	904606	T	gene_name=ECB_00851/ybjL	gene_position=intergenic (+1/+235)	gene_product=protein similar to prophage P2 OGR protein/hypothetical protein	locus_tag=ECB_00851/ECB_00852	snp_type=intergenic
SNP	1876	877	REL606	925905	T	aa_new_seq=N	aa_position=33	aa_ref_seq=D	codon_new_seq=AAC	codon_position=1	codon_ref_seq=GAC	gene_list=ltaE	gene_name=ltaE	gene_position=97	gene_product=L-allo-threonine aldolase, PLP-dependent	gene_strand=<	locus_tag=ECB_00875	snp_type=nonsynonymous
SNP	1877	886	REL606	943475	T	aa_new_seq=I	aa_position=9	aa_ref_seq=M	codon_new_seq=ATA	codon_position=3	codon_ref_seq=ATG	gene_list=infA	gene_name=infA	gene_position=27	gene_product=translation initiation factor IF-1	gene_strand=<	locus_tag=ECB_00888	snp_type=nonsynonymous
SNP	1878	887	REL606	946011	G	aa_new_seq=R	aa_position=81	aa_ref_seq=R	codon_new_seq=CGC	codon_position=3	codon_ref_seq=CGT	gene_list=cydC	gene_name=cydC	gene_position=243	gene_product=fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component	gene_strand=<	locus_tag=ECB_00890	snp_type=synonymous
SNP	1879	888	REL606	967184	A	aa_new_seq=K	aa_position=142	aa_ref_seq=E	codon_new_seq=AAA	codon_position=1	codon_ref_seq=GAA	gene_list=ycaK	gene_name=ycaK	gene_position=424	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00905	snp_type=nonsynonymous
SNP	1880	890	REL606	1001295	G	aa_new_seq=G	aa_position=185	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=ycbL	gene_name=ycbL	gene_position=554	gene_product=predicted metal-binding enzyme	gene_strand=>	locus_tag=ECB_00931	snp_type=nonsynonymous
SNP	1881	891	REL606	1003885	A	aa_new_seq=C	aa_position=64	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=ompF	gene_name=ompF	gene_position=190	gene_product=outer membrane porin 1a (Ia;b;F)	gene_strand=<	locus_tag=ECB_00933	snp_type=nonsynonymous
SNP	1882	892	REL606	1012717	T	aa_new_seq=V	aa_position=121	aa_ref_seq=V	codon_new_seq=GTA	codon_position=3	codon_ref_seq=GTG	gene_list=ssuD	gene_name=ssuD	gene_position=363	gene_product=alkanesulfonate monooxygenase	gene_strand=<	locus_tag=ECB_00939	snp_type=synonymous
DEL	1883	893	REL606	1019315	1	gene_list=ycbT	gene_name=ycbT	gene_position=coding (418/1071 nt)	gene_product=predicted fimbrial-like adhesin protein	gene_strand=>	locus_tag=ECB_00945
DEL	1884	895	REL606	1037343	1	gene_name=ompA/sulA	gene_position=intergenic (-199/+158)	gene_product=outer membrane protein A (3a;II*;G;d)/SOS cell division inhibitor	locus_tag=ECB_00961/ECB_00962	snp_type=intergenic
SNP	1885	897	REL606	1082646	G	aa_new_seq=R	aa_position=260	aa_ref_seq=K	codon_new_seq=AGG	codon_position=2	codon_ref_seq=AAG	gene_list=agp	gene_name=agp	gene_position=779	gene_product=glucose-1-phosphatase/inositol phosphatase	gene_strand=>	locus_tag=ECB_01005	snp_type=nonsynonymous
SNP	1886	898	REL606	1085185	T	aa_new_seq=V	aa_position=313	aa_ref_seq=V	codon_new_seq=GTA	codon_position=3	codon_ref_seq=GTG	gene_list=ycdG	gene_name=ycdG	gene_position=939	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_01009	snp_type=synonymous
SNP	1887	899	REL606	1088797	C	aa_new_seq=Q	aa_position=117	aa_ref_seq=Q	codon_new_seq=CAG	codon_position=3	codon_ref_seq=CAA	gene_list=ycdL	gene_name=ycdL	gene_position=351	gene_product=predicted enzyme	gene_strand=<	locus_tag=ECB_01014	snp_type=synonymous
SNP	1888	910	REL606	1113198	G	aa_new_seq=A	aa_position=248	aa_ref_seq=A	codon_new_seq=GCG	codon_position=3	codon_ref_seq=GCA	gene_list=ycdW	gene_name=ycdW	gene_position=744	gene_product=2-ketoacid reductase	gene_strand=>	locus_tag=ECB_01030	snp_type=synonymous
SNP	1889	911	REL606	1114535	T	aa_new_seq=H	aa_position=109	aa_ref_seq=H	codon_new_seq=CAT	codon_position=3	codon_ref_seq=CAC	gene_list=ycdY	gene_name=ycdY	gene_position=327	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_01032	snp_type=synonymous
SNP	1890	912	REL606	1115003	G	aa_new_seq=M	aa_position=47	aa_ref_seq=M	codon_new_seq=GTG	codon_position=1	codon_ref_seq=CTG	gene_list=ycdZ	gene_name=ycdZ	gene_position=139	gene_product=predicted inner membrane protein	gene_strand=>	locus_tag=ECB_01033	snp_type=synonymous
SNP	1891	913	REL606	1115970	A	aa_new_seq=L	aa_position=95	aa_ref_seq=P	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CCG	gene_list=csgG	gene_name=csgG	gene_position=284	gene_product=outer membrane lipoprotein	gene_strand=<	locus_tag=ECB_01034	snp_type=nonsynonymous
SNP	1892	914	REL606	1129572	T	aa_new_seq=D	aa_position=163	aa_ref_seq=G	codon_new_seq=GAC	codon_position=2	codon_ref_seq=GGC	gene_list=yceE	gene_name=yceE	gene_position=488	gene_product=predicted drug efflux system	gene_strand=<	locus_tag=ECB_01049	snp_type=nonsynonymous
SNP	1893	915	REL606	1147840	T	aa_new_seq=V	aa_position=232	aa_ref_seq=A	codon_new_seq=GTC	codon_position=2	codon_ref_seq=GCC	gene_list=flgE	gene_name=flgE	gene_position=695	gene_product=flagellar hook protein E	gene_strand=>	locus_tag=ECB_01072	snp_type=nonsynonymous
SNP	1894	916	REL606	1148998	G	aa_new_seq=D	aa_position=210	aa_ref_seq=N	codon_new_seq=GAC	codon_position=1	codon_ref_seq=AAC	gene_list=flgF	gene_name=flgF	gene_position=628	gene_product=flagellar component of cell-proximal portion of basal-body rod	gene_strand=>	locus_tag=ECB_01073	snp_type=nonsynonymous
SNP	1895	917	REL606	1149407	G	aa_new_seq=R	aa_position=37	aa_ref_seq=Q	codon_new_seq=CGG	codon_position=2	codon_ref_seq=CAG	gene_list=flgG	gene_name=flgG	gene_position=110	gene_product=flagellar component of cell-distal portion of basal-body rod	gene_strand=>	locus_tag=ECB_01074	snp_type=nonsynonymous
INS	1896	918	REL606	1166061	G	gene_name=fabG/acpP	gene_position=intergenic (+88/-123)	gene_product=3-oxoacyl-[acyl-carrier-protein] reductase/acyl carrier protein	locus_tag=ECB_01089/ECB_01090	snp_type=intergenic
INS	1897	919	REL606	1172383	C	gene_name=ycfH/ptsG	gene_position=intergenic (+240/-55)	gene_product=predicted metallodependent hydrolase/fused glucose-specific PTS enzymes: IIB component/IIC component	locus_tag=ECB_01096/ECB_01097	snp_type=intergenic
SNP	1898	920	REL606	1177550	T	aa_new_seq=L	aa_position=115	aa_ref_seq=S	codon_new_seq=TTG	codon_position=2	codon_ref_seq=TCG	gene_list=ycfM	gene_name=ycfM	gene_position=344	gene_product=predicted outer membrane lipoprotein	gene_strand=>	locus_tag=ECB_01101	snp_type=nonsynonymous
SNP	1899	925	REL606	1186699	T	aa_new_seq=T	aa_position=621	aa_ref_seq=A	codon_new_seq=ACA	codon_position=1	codon_ref_seq=GCA	gene_list=mfd	gene_name=mfd	gene_position=1861	gene_product=transcription-repair coupling factor	gene_strand=<	locus_tag=ECB_01110	snp_type=nonsynonymous
SNP	1900	929	REL606	1208180	A	aa_new_seq=V	aa_position=321	aa_ref_seq=V	codon_new_seq=GTT	codon_position=3	codon_ref_seq=GTC	gene_list=trmU	gene_name=trmU	gene_position=963	gene_product=tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	gene_strand=<	locus_tag=ECB_01131	snp_type=synonymous
SNP	1901	930	REL606	1212335	G	gene_name=ycgW/ycgX	gene_position=intergenic (-167/+529)	gene_product=hypothetical protein/hypothetical protein	locus_tag=ECB_01135/ECB_01136	snp_type=intergenic
SNP	1902	931	REL606	1218314	G	aa_new_seq=A	aa_position=276	aa_ref_seq=T	codon_new_seq=GCA	codon_position=1	codon_ref_seq=ACA	gene_list=ycgG	gene_name=ycgG	gene_position=826	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_01143	snp_type=nonsynonymous
INS	1903	934	REL606	1256288	C	gene_name=ycgV/ychF	gene_position=intergenic (-186/+583)	gene_product=predicted adhesin/translation-associated GTPase	locus_tag=ECB_01177/ECB_01178	snp_type=intergenic
SNP	1904	935	REL606	1259582	T	aa_new_seq=N	aa_position=458	aa_ref_seq=D	codon_new_seq=AAT	codon_position=1	codon_ref_seq=GAT	gene_list=ychM	gene_name=ychM	gene_position=1372	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_01181	snp_type=nonsynonymous
SNP	1905	946	REL606	1276386	C	aa_new_seq=L	aa_position=461	aa_ref_seq=L	codon_new_seq=TTG	codon_position=3	codon_ref_seq=TTA	gene_list=narX	gene_name=narX	gene_position=1383	gene_product=sensory histidine kinase in two-component regulatory system with NarL	gene_strand=<	locus_tag=ECB_01200	snp_type=synonymous
SNP	1906	957	REL606	1331794	A	aa_new_seq=K	aa_position=792	aa_ref_seq=T	codon_new_seq=AAG	codon_position=2	codon_ref_seq=ACG	gene_list=topA	gene_name=topA	gene_position=2375	gene_product=DNA topoisomerase I	gene_strand=>	locus_tag=ECB_01250	snp_type=nonsynonymous
SNP	1907	958	REL606	1339424	G	aa_new_seq=E	aa_position=165	aa_ref_seq=E	codon_new_seq=GAG	codon_position=3	codon_ref_seq=GAA	gene_list=yciM	gene_name=yciM	gene_position=495	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_01257	snp_type=synonymous
SNP	1908	959	REL606	1357824	T	gene_name=ycjJ/ycjK	gene_position=intergenic (-269/+34)	gene_product=putrescine importer/gamma-Glu-putrescine synthase	locus_tag=ECB_01273/ECB_01274	snp_type=intergenic
SNP	1909	960	REL606	1361067	C	gene_name=ycjC/aldH	gene_position=intergenic (+231/-44)	gene_product=DNA-binding transcriptional repressor/gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent	locus_tag=ECB_01276/ECB_01277	snp_type=intergenic
SNP	1910	961	REL606	1364103	T	aa_new_seq=V	aa_position=62	aa_ref_seq=V	codon_new_seq=GTT	codon_position=3	codon_ref_seq=GTC	gene_list=goaG	gene_name=goaG	gene_position=186	gene_product=GABA aminotransferase, PLP-dependent	gene_strand=>	locus_tag=ECB_01279	snp_type=synonymous
SNP	1911	962	REL606	1364638	T	aa_new_seq=*	aa_position=241	aa_ref_seq=Q	codon_new_seq=TAA	codon_position=1	codon_ref_seq=CAA	gene_list=goaG	gene_name=goaG	gene_position=721	gene_product=GABA aminotransferase, PLP-dependent	gene_strand=>	locus_tag=ECB_01279	snp_type=nonsynonymous
SNP	1912	963	REL606	1396262	G	aa_new_seq=R	aa_position=145	aa_ref_seq=R	codon_new_seq=CGC	codon_position=3	codon_ref_seq=CGT	gene_list=fnr	gene_name=fnr	gene_position=435	gene_product=DNA-binding transcriptional dual regulator, global regulator of anaerobic growth	gene_strand=<	locus_tag=ECB_01311	snp_type=synonymous
SNP	1913	964	REL606	1407377	T	aa_new_seq=*	aa_position=233	aa_ref_seq=Q	codon_new_seq=TAA	codon_position=1	codon_ref_seq=CAA	gene_list=dbpA	gene_name=dbpA	gene_position=697	gene_product=ATP-dependent RNA helicase, specific for 23S rRNA	gene_strand=>	locus_tag=ECB_01320	snp_type=nonsynonymous
DEL	1914	965	REL606	1415611	1	gene_name=kil/sieB	gene_position=intergenic (-212/-230)	gene_product=inhibitor of ftsZ, killing protein/phage superinfection exclusion protein	locus_tag=ECB_01330/ECB_01331	snp_type=intergenic
DEL	1915	971	REL606	1420108	1	gene_list=trkG	gene_name=trkG	gene_position=coding (1447/1458 nt)	gene_product=potassium transporter subunit	gene_strand=>	locus_tag=ECB_01339
MOB	1773	23,60	REL606	1420709	IS3	1	4	gene_name=ynaK/ECB_01341	gene_position=intergenic (+21/-9)	gene_product=conserved protein/hypothetical protein	ins_start=GA	locus_tag=ECB_01340/ECB_01341	snp_type=intergenic
MOB	1774	4,17	REL606	1428792	IS1	-1	9	gene_name=ompN/ydbK	gene_position=intergenic (-293/+66)	gene_product=outer membrane pore protein N, non-specific/fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein	locus_tag=ECB_01348/ECB_01349	snp_type=intergenic
DEL	1916	984	REL606	1428837	1	gene_name=ompN/ydbK	gene_position=intergenic (-338/+29)	gene_product=outer membrane pore protein N, non-specific/fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein	locus_tag=ECB_01348/ECB_01349	snp_type=intergenic
INS	1917	985	REL606	1439581	G	gene_list=feaB	gene_name=feaB	gene_position=coding (457/1500 nt)	gene_product=phenylacetaldehyde dehydrogenase	gene_strand=>	locus_tag=ECB_01357
SNP	1918	986	REL606	1440085	G	aa_new_seq=A	aa_position=321	aa_ref_seq=T	codon_new_seq=GCG	codon_position=1	codon_ref_seq=ACG	gene_list=feaB	gene_name=feaB	gene_position=961	gene_product=phenylacetaldehyde dehydrogenase	gene_strand=>	locus_tag=ECB_01357	snp_type=nonsynonymous
SNP	1919	987	REL606	1440538	G	aa_new_seq=M	aa_position=472	aa_ref_seq=M	codon_new_seq=GTG	codon_position=1	codon_ref_seq=ATG	gene_list=feaB	gene_name=feaB	gene_position=1414	gene_product=phenylacetaldehyde dehydrogenase	gene_strand=>	locus_tag=ECB_01357	snp_type=synonymous
SNP	1920	989	REL606	1450502	T	aa_new_seq=V	aa_position=87	aa_ref_seq=A	codon_new_seq=GTA	codon_position=2	codon_ref_seq=GCA	gene_list=ynbD	gene_name=ynbD	gene_position=260	gene_product=predicted phosphatase, inner membrane protein	gene_strand=>	locus_tag=ECB_01366	snp_type=nonsynonymous
SUB	1921	992,993,994,995	REL606	1451965	4	GCGC	gene_list=acpD	gene_name=acpD	gene_position=coding (224-227/606 nt)	gene_product=acyl carrier protein phosphodiesterase	gene_strand=<	locus_tag=ECB_01367
SUB	1922	996,997	REL606	1451970	2	AG	gene_list=acpD	gene_name=acpD	gene_position=coding (221-222/606 nt)	gene_product=acyl carrier protein phosphodiesterase	gene_strand=<	locus_tag=ECB_01367
INS	1923	998	REL606	1451972	A	gene_list=acpD	gene_name=acpD	gene_position=coding (220/606 nt)	gene_product=acyl carrier protein phosphodiesterase	gene_strand=<	locus_tag=ECB_01367
SNP	1924	1012	REL606	1465314	A	gene_name=ydcI/ydcJ	gene_position=intergenic (-134/-83)	gene_product=predicted DNA-binding transcriptional regulator/hypothetical protein	locus_tag=ECB_01379/ECB_01380	snp_type=intergenic
DEL	1925	1013	REL606	1470498	1	gene_list=ydcK	gene_name=ydcK	gene_position=coding (61/981 nt)	gene_product=predicted enzyme	gene_strand=<	locus_tag=ECB_01385
SNP	1926	1014	REL606	1472605	T	aa_new_seq=C	aa_position=13	aa_ref_seq=C	codon_new_seq=TGT	codon_position=3	codon_ref_seq=TGC	gene_list=ydcL	gene_name=ydcL	gene_position=39	gene_product=predicted lipoprotein	gene_strand=>	locus_tag=ECB_01388	snp_type=synonymous
SNP	1927	1030	REL606	1511178	T	aa_new_seq=S	aa_position=95	aa_ref_seq=G	codon_new_seq=AGC	codon_position=1	codon_ref_seq=GGC	gene_list=narW	gene_name=narW	gene_position=283	gene_product=nitrate reductase 2 (NRZ), delta subunit (assembly subunit)	gene_strand=<	locus_tag=ECB_01424	snp_type=nonsynonymous
SNP	1928	1031	REL606	1520967	A	aa_new_seq=I	aa_position=99	aa_ref_seq=T	codon_new_seq=ATC	codon_position=2	codon_ref_seq=ACC	gene_list=yddG	gene_name=yddG	gene_position=296	gene_product=predicted methyl viologen efflux pump	gene_strand=<	locus_tag=ECB_01431	snp_type=nonsynonymous
SNP	1929	1032	REL606	1522006	T	aa_new_seq=G	aa_position=152	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=fdnG	gene_name=fdnG	gene_position=456	gene_product=formate dehydrogenase-N, alpha subunit, nitrate-inducible	gene_strand=>	locus_tag=ECB_01432	snp_type=synonymous
SNP	1930	1034	REL606	1533135	G	aa_new_seq=G	aa_position=238	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=yddQ	gene_name=yddQ	gene_position=714	gene_product=D-ala-D-ala transporter subunit	gene_strand=<	locus_tag=ECB_01443	snp_type=synonymous
SNP	1931	1041	REL606	1583771	C	aa_new_seq=H	aa_position=322	aa_ref_seq=H	codon_new_seq=CAC	codon_position=3	codon_ref_seq=CAT	gene_list=yneK	gene_name=yneK	gene_position=966	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_01484	snp_type=synonymous
SNP	1932	1042	REL606	1587505	T	aa_new_seq=*	aa_position=56	aa_ref_seq=Q	codon_new_seq=TAA	codon_position=1	codon_ref_seq=CAA	gene_list=marA	gene_name=marA	gene_position=166	gene_product=DNA-binding transcriptional dual activator of multiple antibiotic resistance	gene_strand=>	locus_tag=ECB_01490	snp_type=nonsynonymous
SNP	1933	1043	REL606	1591928	A	aa_new_seq=G	aa_position=112	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=ydeI	gene_name=ydeI	gene_position=336	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_01495	snp_type=synonymous
INS	1934	1083	REL606	1618094	C	gene_list=ECB_01528	gene_name=ECB_01528	gene_position=coding (35/381 nt)	gene_product=antitermination protein Q homolog from lambdoid prophage DLP12	gene_strand=<	locus_tag=ECB_01528
SNP	1935	1088	REL606	1626202	A	aa_new_seq=K	aa_position=137	aa_ref_seq=E	codon_new_seq=AAA	codon_position=1	codon_ref_seq=GAA	gene_list=ydfE	gene_name=ydfE	gene_position=409	gene_product=predicted protein	gene_strand=>	locus_tag=ECB_01545	snp_type=nonsynonymous
SNP	1936	1089	REL606	1640944	A	aa_new_seq=I	aa_position=47	aa_ref_seq=M	codon_new_seq=ATA	codon_position=3	codon_ref_seq=ATG	gene_list=ynfH	gene_name=ynfH	gene_position=141	gene_product=oxidoreductase, membrane subunit	gene_strand=>	locus_tag=ECB_01559	snp_type=nonsynonymous
DEL	1937	1093	REL606	1691520	1	gene_name=ydgR/gst	gene_position=intergenic (+55/-51)	gene_product=putative tripeptide transporter permease/glutathionine S-transferase	locus_tag=ECB_01604/ECB_01605	snp_type=intergenic
SNP	1938	1094	REL606	1700108	A	aa_new_seq=*	aa_position=265	aa_ref_seq=W	codon_new_seq=TAG	codon_position=2	codon_ref_seq=TGG	gene_list=ydhK	gene_name=ydhK	gene_position=794	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_01615	snp_type=nonsynonymous
SNP	1939	1097	REL606	1722440	C	aa_new_seq=A	aa_position=319	aa_ref_seq=T	codon_new_seq=GCG	codon_position=1	codon_ref_seq=ACG	gene_list=ydhQ	gene_name=ydhQ	gene_position=955	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_01635	snp_type=nonsynonymous
SNP	1940	1102	REL606	1733343	A	aa_new_seq=N	aa_position=127	aa_ref_seq=D	codon_new_seq=AAT	codon_position=1	codon_ref_seq=GAT	gene_list=pykF	gene_name=pykF	gene_position=379	gene_product=pyruvate kinase	gene_strand=>	locus_tag=ECB_01645	snp_type=nonsynonymous
SNP	1941	1104	REL606	1750149	T	aa_new_seq=P	aa_position=124	aa_ref_seq=P	codon_new_seq=CCT	codon_position=3	codon_ref_seq=CCC	gene_list=ydiN	gene_name=ydiN	gene_position=372	gene_product=predicted transporter	gene_strand=>	locus_tag=ECB_01660	snp_type=synonymous
MOB	1775	43,24	REL606	1776434	IS150	-1	4	gene_name=pheS/pheM	gene_position=intergenic (-225/+56)	gene_product=phenylalanyl-tRNA synthetase alpha subunit/phenylalanyl-tRNA synthetase operon leader peptide	locus_tag=ECB_01683/ECB_01684	snp_type=intergenic
DEL	1942	1105	REL606	1795815	1	gene_name=celF/celD	gene_position=intergenic (-50/+55)	gene_product=cryptic phospho-beta-glucosidase, NAD(P)-binding/DNA-binding transcriptional dual regulator	locus_tag=ECB_01703/ECB_01704	snp_type=intergenic
SNP	1943	1106	REL606	1801738	A	aa_new_seq=G	aa_position=155	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=ydjR	gene_name=ydjR	gene_position=465	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_01711	snp_type=synonymous
SNP	1944	1108	REL606	1803534	A	aa_new_seq=*	aa_position=219	aa_ref_seq=Q	codon_new_seq=TAA	codon_position=1	codon_ref_seq=CAA	gene_list=astE	gene_name=astE	gene_position=655	gene_product=succinylglutamate desuccinylase	gene_strand=<	locus_tag=ECB_01713	snp_type=nonsynonymous
SNP	1945	1109	REL606	1823483	G	aa_new_seq=L	aa_position=236	aa_ref_seq=F	codon_new_seq=CTT	codon_position=1	codon_ref_seq=TTT	gene_list=topB	gene_name=topB	gene_position=706	gene_product=DNA topoisomerase III	gene_strand=<	locus_tag=ECB_01732	snp_type=nonsynonymous
SNP	1946	1110	REL606	1825303	C	gene_name=selD/ydjA	gene_position=intergenic (-67/+50)	gene_product=selenophosphate synthetase/predicted oxidoreductase	locus_tag=ECB_01733/ECB_01734	snp_type=intergenic
SNP	1947	1111	REL606	1829964	A	aa_new_seq=L	aa_position=415	aa_ref_seq=S	codon_new_seq=TTG	codon_position=2	codon_ref_seq=TCG	gene_list=ydjE	gene_name=ydjE	gene_position=1244	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_01738	snp_type=nonsynonymous
INS	1948	1112	REL606	1849061	G	gene_list=yeaI	gene_name=yeaI	gene_position=coding (1448/1476 nt)	gene_product=predicted diguanylate cyclase	gene_strand=>	locus_tag=ECB_01754
SNP	1949	1117	REL606	1882713	A	aa_new_seq=A	aa_position=83	aa_ref_seq=A	codon_new_seq=GCA	codon_position=3	codon_ref_seq=GCG	gene_list=manZ	gene_name=manZ	gene_position=249	gene_product=mannose-specific enzyme IID component of PTS	gene_strand=>	locus_tag=ECB_01789	snp_type=synonymous
SNP	1950	1118	REL606	1886035	C	aa_new_seq=A	aa_position=46	aa_ref_seq=T	codon_new_seq=GCA	codon_position=1	codon_ref_seq=ACA	gene_list=yobF	gene_name=yobF	gene_position=136	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_01794	snp_type=nonsynonymous
SNP	1951	1119	REL606	1902731	G	aa_new_seq=T	aa_position=146	aa_ref_seq=I	codon_new_seq=ACC	codon_position=2	codon_ref_seq=ATC	gene_list=yebZ	gene_name=yebZ	gene_position=437	gene_product=predicted inner membrane protein	gene_strand=<	locus_tag=ECB_01811	snp_type=nonsynonymous
SNP	1952	1120	REL606	1921128	A	aa_new_seq=V	aa_position=11	aa_ref_seq=A	codon_new_seq=GTA	codon_position=2	codon_ref_seq=GCA	gene_list=znuA	gene_name=znuA	gene_position=32	gene_product=high-affinity zinc transporter periplasmic component	gene_strand=<	locus_tag=ECB_01828	snp_type=nonsynonymous
SNP	1953	1121	REL606	1935390	A	aa_new_seq=C	aa_position=130	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=torZ	gene_name=torZ	gene_position=388	gene_product=trimethylamine N-oxide reductase system III, catalytic subunit	gene_strand=<	locus_tag=ECB_01843	snp_type=nonsynonymous
SNP	1954	1122	REL606	1966467	C	aa_new_seq=G	aa_position=84	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=yecR	gene_name=yecR	gene_position=252	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_01872	snp_type=synonymous
SNP	1955	1129	REL606	1983855	C	aa_new_seq=R	aa_position=332	aa_ref_seq=W	codon_new_seq=CGG	codon_position=1	codon_ref_seq=TGG	gene_list=yeeJ	gene_name=yeeJ	gene_position=994	gene_product=adhesin	gene_strand=>	locus_tag=ECB_01891	snp_type=nonsynonymous
DEL	1956	1136	REL606	2007567	1	gene_list=ECB_01906	gene_name=ECB_01906	gene_position=coding (372/408 nt)	gene_product=conserved hypothetical protein	gene_strand=<	locus_tag=ECB_01906
SNP	1957	1137	REL606	2007865	C	aa_new_seq=R	aa_position=25	aa_ref_seq=H	codon_new_seq=CGC	codon_position=2	codon_ref_seq=CAC	gene_list=ECB_01906	gene_name=ECB_01906	gene_position=74	gene_product=conserved hypothetical protein	gene_strand=<	locus_tag=ECB_01906	snp_type=nonsynonymous
SNP	1958	1138	REL606	2012737	C	aa_new_seq=G	aa_position=85	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=dacD	gene_name=dacD	gene_position=254	gene_product=D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)	gene_strand=<	locus_tag=ECB_01913	snp_type=nonsynonymous
INS	1959	1139	REL606	2017730	G	gene_name=yeeF/yeeY	gene_position=intergenic (-225/+42)	gene_product=predicted amino-acid transporter/predicted DNA-binding transcriptional regulator	locus_tag=ECB_01917/ECB_01918	snp_type=intergenic
SNP	1960	1146	REL606	2032347	T	aa_new_seq=N	aa_position=151	aa_ref_seq=D	codon_new_seq=AAC	codon_position=1	codon_ref_seq=GAC	gene_list=manB	gene_name=manB	gene_position=451	gene_product=Phosphomannomutase	gene_strand=<	locus_tag=ECB_01932	snp_type=nonsynonymous
SNP	1961	1173	REL606	2130799	G	aa_new_seq=G	aa_position=181	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=gatY	gene_name=gatY	gene_position=543	gene_product=D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit	gene_strand=<	locus_tag=ECB_02024	snp_type=synonymous
SNP	1962	1175	REL606	2162780	C	aa_new_seq=G	aa_position=120	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=yehR	gene_name=yehR	gene_position=360	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_02052	snp_type=synonymous
SNP	1963	1177	REL606	2166182	A	aa_new_seq=R	aa_position=40	aa_ref_seq=R	codon_new_seq=CGA	codon_position=3	codon_ref_seq=CGG	gene_list=yehV	gene_name=yehV	gene_position=120	gene_product=DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_02056	snp_type=synonymous
SNP	1964	1178	REL606	2167011	C	aa_new_seq=A	aa_position=221	aa_ref_seq=A	codon_new_seq=GCG	codon_position=3	codon_ref_seq=GCA	gene_list=yehW	gene_name=yehW	gene_position=663	gene_product=predicted transporter subunit: membrane component of ABC superfamily	gene_strand=<	locus_tag=ECB_02058	snp_type=synonymous
INS	1965	1183	REL606	2190393	C	gene_list=mglA	gene_name=mglA	gene_position=coding (135/1521 nt)	gene_product=fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components	gene_strand=<	locus_tag=ECB_02078
SNP	1966	1185	REL606	2197386	T	aa_new_seq=T	aa_position=208	aa_ref_seq=A	codon_new_seq=ACA	codon_position=1	codon_ref_seq=GCA	gene_list=cirA	gene_name=cirA	gene_position=622	gene_product=ferric iron-catecholate outer membrane transporter	gene_strand=<	locus_tag=ECB_02084	snp_type=nonsynonymous
SNP	1967	1186	REL606	2198299	G	gene_name=cirA/lysP	gene_position=intergenic (-292/+2)	gene_product=ferric iron-catecholate outer membrane transporter/lysine transporter	locus_tag=ECB_02084/ECB_02085	snp_type=intergenic
SNP	1968	1187	REL606	2200070	A	aa_new_seq=C	aa_position=263	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=yeiE	gene_name=yeiE	gene_position=787	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=<	locus_tag=ECB_02086	snp_type=nonsynonymous
SNP	1969	1188	REL606	2216447	T	aa_new_seq=T	aa_position=13	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=yeiW	gene_name=yeiW	gene_position=37	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02100	snp_type=nonsynonymous
SNP	1970	1189	REL606	2226502	C	aa_new_seq=R	aa_position=14	aa_ref_seq=R	codon_new_seq=CGC	codon_position=3	codon_ref_seq=CGT	gene_list=yejE	gene_name=yejE	gene_position=42	gene_product=predicted oligopeptide transporter subunit	gene_strand=>	locus_tag=ECB_02109	snp_type=synonymous
SNP	1971	1191	REL606	2236153	A	aa_new_seq=H	aa_position=197	aa_ref_seq=R	codon_new_seq=CAC	codon_position=2	codon_ref_seq=CGC	gene_list=yejM	gene_name=yejM	gene_position=590	gene_product=predicted hydrolase, inner membrane	gene_strand=>	locus_tag=ECB_02118	snp_type=nonsynonymous
INS	1972	1192	REL606	2239749	C	gene_list=yejO	gene_name=yejO	gene_position=coding (340/2511 nt)	gene_product=predicted autotransporter outer membrane protein	gene_strand=<	locus_tag=ECB_02119
SNP	1973	1193	REL606	2244525	A	aa_new_seq=A	aa_position=123	aa_ref_seq=A	codon_new_seq=GCT	codon_position=3	codon_ref_seq=GCC	gene_list=ccmF	gene_name=ccmF	gene_position=369	gene_product=heme lyase, CcmF subunit	gene_strand=<	locus_tag=ECB_02123	snp_type=synonymous
INS	1974	1194	REL606	2247103	C	gene_list=ccmA	gene_name=ccmA	gene_position=coding (531/624 nt)	gene_product=heme exporter subunit	gene_strand=<	locus_tag=ECB_02128
SNP	1975	1198	REL606	2265986	A	aa_new_seq=S	aa_position=181	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=rcsC	gene_name=rcsC	gene_position=543	gene_product=hybrid sensory kinase in two-component regulatory system with RcsB and YojN	gene_strand=<	locus_tag=ECB_02145	snp_type=synonymous
SNP	1976	1199	REL606	2271283	G	aa_new_seq=A	aa_position=159	aa_ref_seq=T	codon_new_seq=GCT	codon_position=1	codon_ref_seq=ACT	gene_list=atoA	gene_name=atoA	gene_position=475	gene_product=acetyl-CoA:acetoacetyl-CoA transferase, beta subunit	gene_strand=>	locus_tag=ECB_02149	snp_type=nonsynonymous
SNP	1977	1200	REL606	2277269	T	aa_new_seq=L	aa_position=1278	aa_ref_seq=L	codon_new_seq=CTA	codon_position=3	codon_ref_seq=CTG	gene_list=yfaS	gene_name=yfaS	gene_position=3834	gene_product=putative membrane protein	gene_strand=<	locus_tag=ECB_02154	snp_type=synonymous
SNP	1978	1202	REL606	2283856	G	aa_new_seq=R	aa_position=755	aa_ref_seq=R	codon_new_seq=CGC	codon_position=3	codon_ref_seq=CGT	gene_list=gyrA	gene_name=gyrA	gene_position=2265	gene_product=DNA gyrase subunit A	gene_strand=<	locus_tag=ECB_02157	snp_type=synonymous
SNP	1979	1203	REL606	2293568	A	aa_new_seq=L	aa_position=668	aa_ref_seq=L	codon_new_seq=CTA	codon_position=3	codon_ref_seq=CTG	gene_list=nrdA	gene_name=nrdA	gene_position=2004	gene_product=ribonucleotide-diphosphate reductase alpha subunit	gene_strand=>	locus_tag=ECB_02160	snp_type=synonymous
SNP	1980	1204	REL606	2301407	T	aa_new_seq=S	aa_position=145	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=glpB	gene_name=glpB	gene_position=435	gene_product=anaerobic glycerol-3-phosphate dehydrogenase subunit B	gene_strand=>	locus_tag=ECB_02168	snp_type=synonymous
SNP	1981	1207	REL606	2317419	C	aa_new_seq=R	aa_position=297	aa_ref_seq=*	codon_new_seq=CGA	codon_position=1	codon_ref_seq=TGA	gene_list=yfbH	gene_name=yfbH	gene_position=889	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_02182	snp_type=nonsynonymous
SNP	1982	1208	REL606	2319260	A	aa_new_seq=D	aa_position=64	aa_ref_seq=G	codon_new_seq=GAC	codon_position=2	codon_ref_seq=GGC	gene_list=yfbW	gene_name=yfbW	gene_position=191	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_02184	snp_type=nonsynonymous
MOB	1776	13,61	REL606	2322340	IS186	1	6	gene_list=menC	gene_name=menC	gene_position=coding (131-136/963 nt)	gene_product=O-succinylbenzoate synthase	gene_strand=<	locus_tag=ECB_02188
INS	1983	1209	REL606	2332083	A	gene_name=yfbM/ECB_02199	gene_position=intergenic (+23/-64)	gene_product=hypothetical protein/PROBABLE ISRSO11-TRANSPOSASE ORFA PROTEIN	locus_tag=ECB_02198/ECB_02199	snp_type=intergenic
INS	1984	1210	REL606	2333539	T	gene_name=ECB_02200/nuoN	gene_position=intergenic (+35/+33)	gene_product=YadA protein/NADH dehydrogenase subunit N	locus_tag=ECB_02200/ECB_02201	snp_type=intergenic
SNP	1985	1211	REL606	2363952	A	aa_new_seq=S	aa_position=42	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=yfcF	gene_name=yfcF	gene_position=126	gene_product=predicted enzyme	gene_strand=<	locus_tag=ECB_02226	snp_type=synonymous
SNP	1986	1212	REL606	2365779	A	aa_new_seq=L	aa_position=160	aa_ref_seq=L	codon_new_seq=CTA	codon_position=3	codon_ref_seq=CTG	gene_list=yfcH	gene_name=yfcH	gene_position=480	gene_product=conserved protein with NAD(P)-binding Rossmann-fold domain	gene_strand=>	locus_tag=ECB_02229	snp_type=synonymous
SNP	1987	1213	REL606	2374708	A	aa_new_seq=L	aa_position=190	aa_ref_seq=P	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CCG	gene_list=dedD	gene_name=dedD	gene_position=569	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02239	snp_type=nonsynonymous
SNP	1988	1214	REL606	2389878	T	aa_new_seq=R	aa_position=33	aa_ref_seq=S	codon_new_seq=AGA	codon_position=3	codon_ref_seq=AGC	gene_list=mepA	gene_name=mepA	gene_position=99	gene_product=penicillin-insensitive murein endopeptidase	gene_strand=<	locus_tag=ECB_02253	snp_type=nonsynonymous
SNP	1989	1215	REL606	2393070	G	aa_new_seq=G	aa_position=201	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=yfcO	gene_name=yfcO	gene_position=603	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02257	snp_type=synonymous
SNP	1990	1218	REL606	2446984	C	gene_name=mntH/nupC	gene_position=intergenic (-53/-283)	gene_product=manganese transport protein MntH/nucleoside (except guanosine) transporter	locus_tag=ECB_02301/ECB_02302	snp_type=intergenic
MOB	1777	40,29	REL606	2448493	IS186	1	6	gene_name=nupC/yfeA	gene_position=intergenic (+24/+21)	gene_product=nucleoside (except guanosine) transporter/predicted diguanylate cyclase	locus_tag=ECB_02302/ECB_02303	snp_type=intergenic
SNP	1991	1219	REL606	2450378	A	aa_new_seq=C	aa_position=111	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=yfeA	gene_name=yfeA	gene_position=331	gene_product=predicted diguanylate cyclase	gene_strand=<	locus_tag=ECB_02303	snp_type=nonsynonymous
SNP	1992	1229	REL606	2483043	A	aa_new_seq=C	aa_position=69	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=yffI	gene_name=yffI	gene_position=205	gene_product=predicted carboxysome structural protein with predicted role in ethanolamine utilization	gene_strand=<	locus_tag=ECB_02338	snp_type=nonsynonymous
SNP	1993	1235	REL606	2529651	T	aa_new_seq=A	aa_position=113	aa_ref_seq=A	codon_new_seq=GCT	codon_position=3	codon_ref_seq=GCC	gene_list=hyfG	gene_name=hyfG	gene_position=339	gene_product=hydrogenase 4, subunit	gene_strand=>	locus_tag=ECB_02379	snp_type=synonymous
SNP	1994	1237	REL606	2569859	G	aa_new_seq=P	aa_position=1083	aa_ref_seq=L	codon_new_seq=CCG	codon_position=2	codon_ref_seq=CTG	gene_list=yfhM	gene_name=yfhM	gene_position=3248	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02412	snp_type=nonsynonymous
SNP	1995	1238	REL606	2570083	A	aa_new_seq=F	aa_position=1008	aa_ref_seq=F	codon_new_seq=TTT	codon_position=3	codon_ref_seq=TTC	gene_list=yfhM	gene_name=yfhM	gene_position=3024	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02412	snp_type=synonymous
SNP	1996	1243	REL606	2583071	A	gene_name=iscR/yfhQ	gene_position=intergenic (-241/+211)	gene_product=DNA-binding transcriptional repressor/predicted methyltransferase	locus_tag=ECB_02423/ECB_02424	snp_type=intergenic
DEL	1997	1247	REL606	2611313	1	gene_list=yfhK	gene_name=yfhK	gene_position=coding (485/1428 nt)	gene_product=predicted sensory kinase in two-component system	gene_strand=<	locus_tag=ECB_02448
INS	1998	1248	REL606	2616302	G	gene_name=purL/yfhD	gene_position=intergenic (-42/-354)	gene_product=phosphoribosylformylglycinamidine synthase/putative periplasmic binding protein of transport system; b2558_1	locus_tag=ECB_02449/ECB_02450	snp_type=intergenic
SNP	1999	1252	REL606	2628718	C	gene_name=lepA/rseC	gene_position=intergenic (-101/+97)	gene_product=GTP-binding protein LepA/RseC protein involved in reduction of the SoxR iron-sulfur cluster	locus_tag=ECB_02463/ECB_02464	snp_type=intergenic
SNP	2000	1255	REL606	2639449	A	aa_new_seq=S	aa_position=191	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=yfiF	gene_name=yfiF	gene_position=573	gene_product=predicted methyltransferase	gene_strand=<	locus_tag=ECB_02475	snp_type=synonymous
DEL	2001	1256	REL606	2646763	1	gene_list=kgtP	gene_name=kgtP	gene_position=coding (477/1299 nt)	gene_product=alpha-ketoglutarate transporter	gene_strand=<	locus_tag=ECB_02481
MOB	1778	36,26	REL606	2655781	IS150	-1	3	gene_list=yfiH	gene_name=yfiH	gene_position=coding (660-662/732 nt)	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02483
SNP	2002	1265	REL606	2659827	C	aa_new_seq=R	aa_position=226	aa_ref_seq=W	codon_new_seq=CGG	codon_position=1	codon_ref_seq=TGG	gene_list=pheA	gene_name=pheA	gene_position=676	gene_product=fused chorismate mutase P/prephenate dehydratase	gene_strand=>	locus_tag=ECB_02488	snp_type=nonsynonymous
SNP	2003	1267	REL606	2665639	T	aa_new_seq=Q	aa_position=100	aa_ref_seq=L	codon_new_seq=CAG	codon_position=2	codon_ref_seq=CTG	gene_list=rplS	gene_name=rplS	gene_position=299	gene_product=50S ribosomal protein L19	gene_strand=<	locus_tag=ECB_02495	snp_type=nonsynonymous
SNP	2004	1271	REL606	2697224	C	aa_new_seq=A	aa_position=375	aa_ref_seq=A	codon_new_seq=GCC	codon_position=3	codon_ref_seq=GCT	gene_list=nrdE	gene_name=nrdE	gene_position=1125	gene_product=ribonucleotide-diphosphate reductase alpha subunit	gene_strand=>	locus_tag=ECB_02531	snp_type=synonymous
SNP	2005	1272	REL606	2707154	C	aa_new_seq=A	aa_position=290	aa_ref_seq=V	codon_new_seq=GCT	codon_position=2	codon_ref_seq=GTT	gene_list=emrA	gene_name=emrA	gene_position=869	gene_product=multidrug efflux system	gene_strand=>	locus_tag=ECB_02540	snp_type=nonsynonymous
SNP	2006	1282	REL606	2723462	G	gene_name=srlD/gutM	gene_position=intergenic (+87/-19)	gene_product=3-ketoacyl-(acyl-carrier-protein) reductase/DNA-binding transcriptional activator of glucitol operon	locus_tag=ECB_02555/ECB_02556	snp_type=intergenic
SNP	2007	1283	REL606	2724782	C	aa_new_seq=T	aa_position=37	aa_ref_seq=I	codon_new_seq=ACC	codon_position=2	codon_ref_seq=ATC	gene_list=gutQ	gene_name=gutQ	gene_position=110	gene_product=predicted phosphosugar-binding protein	gene_strand=>	locus_tag=ECB_02558	snp_type=nonsynonymous
SNP	2008	1284	REL606	2726501	C	aa_new_seq=A	aa_position=217	aa_ref_seq=T	codon_new_seq=GCT	codon_position=1	codon_ref_seq=ACT	gene_list=ygaA	gene_name=ygaA	gene_position=649	gene_product=anaerobic nitric oxide reductase transcription regulator	gene_strand=<	locus_tag=ECB_02559	snp_type=nonsynonymous
SNP	2009	1285	REL606	2753451	A	aa_new_seq=H	aa_position=500	aa_ref_seq=R	codon_new_seq=CAC	codon_position=2	codon_ref_seq=CGC	gene_list=mutS	gene_name=mutS	gene_position=1499	gene_product=DNA mismatch repair protein	gene_strand=>	locus_tag=ECB_02583	snp_type=nonsynonymous
SNP	2010	1286	REL606	2753768	T	aa_new_seq=*	aa_position=606	aa_ref_seq=Q	codon_new_seq=TAG	codon_position=1	codon_ref_seq=CAG	gene_list=mutS	gene_name=mutS	gene_position=1816	gene_product=DNA mismatch repair protein	gene_strand=>	locus_tag=ECB_02583	snp_type=nonsynonymous
SNP	2011	1287	REL606	2771282	A	gene_name=cysD/iap	gene_position=intergenic (-92/-160)	gene_product=sulfate adenylyltransferase subunit 2/aminopeptidase in alkaline phosphatase isozyme conversion	locus_tag=ECB_02602/ECB_02603	snp_type=intergenic
SNP	2012	1293	REL606	2780858	G	aa_new_seq=A	aa_position=49	aa_ref_seq=T	codon_new_seq=GCG	codon_position=1	codon_ref_seq=ACG	gene_list=ygcM	gene_name=ygcM	gene_position=145	gene_product=6-pyruvoyl tetrahydrobiopterin synthase (PTPS)	gene_strand=>	locus_tag=ECB_02610	snp_type=nonsynonymous
SNP	2013	1294	REL606	2789588	G	aa_new_seq=G	aa_position=166	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=yqcE	gene_name=yqcE	gene_position=497	gene_product=predicted transporter	gene_strand=>	locus_tag=ECB_02619	snp_type=nonsynonymous
SNP	2014	1306	REL606	2843036	A	aa_new_seq=G	aa_position=198	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=amiC	gene_name=amiC	gene_position=594	gene_product=N-acetylmuramoyl-L-alanine amidase	gene_strand=<	locus_tag=ECB_02665	snp_type=synonymous
MOB	1779	41,18	REL606	2877313	IS150	1	3	gene_list=kduD	gene_name=kduD	gene_position=coding (565-567/762 nt)	gene_product=2-deoxy-D-gluconate 3-dehydrogenase	gene_strand=<	locus_tag=ECB_02690
MOB	1780	48,54	REL606	2899615	IS150	-1	3	gene_list=yqeB	gene_name=yqeB	gene_position=coding (378-380/1626 nt)	gene_product=conserved protein with NAD(P)-binding Rossman fold	gene_strand=<	locus_tag=ECB_02708
SNP	2015	1312	REL606	2906615	A	aa_new_seq=T	aa_position=108	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=ygfM	gene_name=ygfM	gene_position=322	gene_product=predicted oxidoreductase	gene_strand=>	locus_tag=ECB_02713	snp_type=nonsynonymous
SNP	2016	1313	REL606	2935321	C	gene_name=gcvH/gcvT	gene_position=intergenic (-20/+4)	gene_product=glycine cleavage system protein H/glycine cleavage system aminomethyltransferase T	locus_tag=ECB_02736/ECB_02737	snp_type=intergenic
SNP	2017	1315	REL606	2977018	A	aa_new_seq=D	aa_position=45	aa_ref_seq=G	codon_new_seq=GAT	codon_position=2	codon_ref_seq=GGT	gene_list=yggJ	gene_name=yggJ	gene_position=134	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_02776	snp_type=nonsynonymous
SNP	2018	1319	REL606	2999330	A	gene_name=yeeP/flu	gene_position=intergenic (+138/-234)	gene_product=b1999; predicted GTP-binding protein/antigen 43 (Ag43) phase-variable biofilm formation autotransporter	locus_tag=ECB_02799/ECB_02800	snp_type=intergenic
SNP	2019	1320	REL606	3003744	T	aa_new_seq=F	aa_position=405	aa_ref_seq=S	codon_new_seq=TTC	codon_position=2	codon_ref_seq=TCC	gene_list=yeeR	gene_name=yeeR	gene_position=1214	gene_product=predicted membrane protein	gene_strand=>	locus_tag=ECB_02801	snp_type=nonsynonymous
SNP	2020	1331	REL606	3037295	G	aa_new_seq=P	aa_position=567	aa_ref_seq=L	codon_new_seq=CCG	codon_position=2	codon_ref_seq=CTG	gene_list=ECB_02838	gene_name=ECB_02838	gene_position=1700	gene_product=GspD, hypothetical type II secretion protein	gene_strand=<	locus_tag=ECB_02838	snp_type=nonsynonymous
DEL	2021	1334,1335	REL606	3052315	2	gene_list=glcF	gene_name=glcF	gene_position=coding (36-37/1224 nt)	gene_product=glycolate oxidase iron-sulfur subunit	gene_strand=<	locus_tag=ECB_02846
SNP	2022	1336	REL606	3054123	G	aa_new_seq=P	aa_position=264	aa_ref_seq=L	codon_new_seq=CCG	codon_position=2	codon_ref_seq=CTG	gene_list=glcD	gene_name=glcD	gene_position=791	gene_product=glycolate oxidase subunit, FAD-linked	gene_strand=<	locus_tag=ECB_02848	snp_type=nonsynonymous
SNP	2023	1337	REL606	3061822	C	aa_new_seq=Q	aa_position=304	aa_ref_seq=Q	codon_new_seq=CAG	codon_position=3	codon_ref_seq=CAA	gene_list=ECB_02855	gene_name=ECB_02855	gene_position=912	gene_product=conserved hypothetical protein	gene_strand=<	locus_tag=ECB_02855	snp_type=synonymous
SNP	2024	1338	REL606	3061923	C	aa_new_seq=A	aa_position=271	aa_ref_seq=T	codon_new_seq=GCT	codon_position=1	codon_ref_seq=ACT	gene_list=ECB_02855	gene_name=ECB_02855	gene_position=811	gene_product=conserved hypothetical protein	gene_strand=<	locus_tag=ECB_02855	snp_type=nonsynonymous
SNP	2025	1339	REL606	3063476	C	aa_new_seq=A	aa_position=82	aa_ref_seq=T	codon_new_seq=GCC	codon_position=1	codon_ref_seq=ACC	gene_list=ECB_02856	gene_name=ECB_02856	gene_position=244	gene_product=conserved hypothetical protein	gene_strand=<	locus_tag=ECB_02856	snp_type=nonsynonymous
SNP	2026	1340	REL606	3072845	C	aa_new_seq=A	aa_position=11	aa_ref_seq=V	codon_new_seq=GCC	codon_position=2	codon_ref_seq=GTC	gene_list=yghU	gene_name=yghU	gene_position=32	gene_product=predicted S-transferase	gene_strand=>	locus_tag=ECB_02865	snp_type=nonsynonymous
SNP	2027	1341	REL606	3077743	G	aa_new_seq=T	aa_position=170	aa_ref_seq=M	codon_new_seq=ACG	codon_position=2	codon_ref_seq=ATG	gene_list=hybB	gene_name=hybB	gene_position=509	gene_product=predicted hydrogenase 2 cytochrome b type component	gene_strand=<	locus_tag=ECB_02871	snp_type=nonsynonymous
DEL	2028	1345	REL606	3088379	1	gene_list=yghB	gene_name=yghB	gene_position=coding (645/660 nt)	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_02882
SNP	2029	1347	REL606	3105821	A	aa_new_seq=D	aa_position=389	aa_ref_seq=G	codon_new_seq=GAC	codon_position=2	codon_ref_seq=GGC	gene_list=ygiY	gene_name=ygiY	gene_position=1166	gene_product=sensory histidine kinase in two-component regulatory system with QseB	gene_strand=>	locus_tag=ECB_02898	snp_type=nonsynonymous
SNP	2030	1348	REL606	3117097	A	aa_new_seq=T	aa_position=126	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=ygiE	gene_name=ygiE	gene_position=376	gene_product=zinc transporter ZupT	gene_strand=>	locus_tag=ECB_02912	snp_type=nonsynonymous
SNP	2031	1349	REL606	3117473	A	aa_new_seq=Q	aa_position=251	aa_ref_seq=L	codon_new_seq=CAA	codon_position=2	codon_ref_seq=CTA	gene_list=ygiE	gene_name=ygiE	gene_position=752	gene_product=zinc transporter ZupT	gene_strand=>	locus_tag=ECB_02912	snp_type=nonsynonymous
SNP	2032	1350	REL606	3117629	C	gene_name=ygiE/ribB	gene_position=intergenic (+134/+356)	gene_product=zinc transporter ZupT/3,4-dihydroxy-2-butanone 4-phosphate synthase	locus_tag=ECB_02912/ECB_02913	snp_type=intergenic
SNP	2033	1352	REL606	3127663	T	gene_name=yqiK/rfaE	gene_position=intergenic (+302/+491)	gene_product=hypothetical protein/fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	locus_tag=ECB_02921/ECB_02922	snp_type=intergenic
SNP	2034	1353	REL606	3130508	A	aa_new_seq=A	aa_position=656	aa_ref_seq=A	codon_new_seq=GCT	codon_position=3	codon_ref_seq=GCC	gene_list=glnE	gene_name=glnE	gene_position=1968	gene_product=fused deadenylyltransferase/adenylyltransferase for glutamine synthetase	gene_strand=<	locus_tag=ECB_02923	snp_type=synonymous
SNP	2035	1354	REL606	3135301	C	aa_new_seq=L	aa_position=193	aa_ref_seq=F	codon_new_seq=CTC	codon_position=1	codon_ref_seq=TTC	gene_list=cca	gene_name=cca	gene_position=577	gene_product=fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase	gene_strand=>	locus_tag=ECB_02926	snp_type=nonsynonymous
SNP	2036	1355	REL606	3153996	C	aa_new_seq=K	aa_position=23	aa_ref_seq=K	codon_new_seq=AAG	codon_position=3	codon_ref_seq=AAA	gene_list=ygjH	gene_name=ygjH	gene_position=69	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02943	snp_type=synonymous
SNP	2037	1356	REL606	3167907	T	aa_new_seq=P	aa_position=262	aa_ref_seq=P	codon_new_seq=CCA	codon_position=3	codon_ref_seq=CCG	gene_list=ygjO	gene_name=ygjO	gene_position=786	gene_product=predicted methyltransferase small domain	gene_strand=<	locus_tag=ECB_02953	snp_type=synonymous
SNP	2038	1357	REL606	3179094	C	aa_new_seq=G	aa_position=319	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=exuT	gene_name=exuT	gene_position=957	gene_product=hexuronate transporter	gene_strand=>	locus_tag=ECB_02962	snp_type=synonymous
MOB	1781	20,44	REL606	3192744	IS150	1	4	gene_name=tdcG/tdcF	gene_position=intergenic (-61/+8)	gene_product=L-serine dehydratase 3/predicted L-PSP (mRNA) endoribonuclease	locus_tag=ECB_02979/ECB_02980	snp_type=intergenic
SNP	2039	1360	REL606	3197461	G	aa_new_seq=G	aa_position=197	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=tdcC	gene_name=tdcC	gene_position=591	gene_product=L-threonine/L-serine transporter	gene_strand=<	locus_tag=ECB_02983	snp_type=synonymous
INS	2040	1361	REL606	3213814	G	gene_list=agaW	gene_name=agaW	gene_position=coding (186/780 nt)	gene_product=N-acetylgalactosamine-specific enzyme IIC component of PTS	gene_strand=>	locus_tag=ECB_02999
SNP	2041	1362	REL606	3238724	T	aa_new_seq=S	aa_position=15	aa_ref_seq=P	codon_new_seq=TCC	codon_position=1	codon_ref_seq=CCC	gene_list=yhbW	gene_name=yhbW	gene_position=43	gene_product=predicted enzyme	gene_strand=>	locus_tag=ECB_03027	snp_type=nonsynonymous
SNP	2042	1363	REL606	3240003	C	aa_new_seq=C	aa_position=350	aa_ref_seq=Y	codon_new_seq=TGT	codon_position=2	codon_ref_seq=TAT	gene_list=mtr	gene_name=mtr	gene_position=1049	gene_product=tryptophan transporter of high affinity	gene_strand=<	locus_tag=ECB_03028	snp_type=nonsynonymous
SNP	2043	1364	REL606	3241496	T	aa_new_seq=L	aa_position=533	aa_ref_seq=L	codon_new_seq=CTA	codon_position=3	codon_ref_seq=CTG	gene_list=deaD	gene_name=deaD	gene_position=1599	gene_product=ATP-dependent RNA helicase	gene_strand=<	locus_tag=ECB_03029	snp_type=synonymous
INS	2044	1365	REL606	3244240	C	gene_name=nlpI/pnp	gene_position=intergenic (-82/+27)	gene_product=hypothetical protein/polynucleotide phosphorylase/polyadenylase	locus_tag=ECB_03030/ECB_03031	snp_type=intergenic
DEL	2045	1366	REL606	3248434	1	gene_name=rbfA/infB	gene_position=intergenic (-22/+142)	gene_product=ribosome-binding factor A/translation initiation factor IF-2	locus_tag=ECB_03034/ECB_03035	snp_type=intergenic
SNP	2046	1369	REL606	3259432	G	aa_new_seq=G	aa_position=238	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=folP	gene_name=folP	gene_position=714	gene_product=7,8-dihydropteroate synthase	gene_strand=<	locus_tag=ECB_03042	snp_type=synonymous
DEL	1766	1370,25	REL606	3260565	6	gene_list=hflB	gene_name=hflB	gene_position=coding (1600-1605/1935 nt)	gene_product=protease, ATP-dependent zinc-metallo	gene_strand=<	locus_tag=ECB_03043
MOB	1782	52,35	REL606	3268052	IS150	1	3	gene_name=yhbE/rpmA	gene_position=intergenic (-83/+42)	gene_product=conserved inner membrane protein/50S ribosomal protein L27	locus_tag=ECB_03049/ECB_03050	snp_type=intergenic
INS	2047	1373	REL606	3285419	C	gene_list=yhbL	gene_name=yhbL	gene_position=coding (276/654 nt)	gene_product=isoprenoid biosynthesis protein with amidotransferase-like domain	gene_strand=<	locus_tag=ECB_03074
SNP	2048	1374	REL606	3288025	A	aa_new_seq=L	aa_position=79	aa_ref_seq=Q	codon_new_seq=CTA	codon_position=2	codon_ref_seq=CAA	gene_list=arcB	gene_name=arcB	gene_position=236	gene_product=hybrid sensory histidine kinase in two-component regulatory system with ArcA	gene_strand=<	locus_tag=ECB_03075	snp_type=nonsynonymous
SNP	2049	1378	REL606	3322942	C	aa_new_seq=R	aa_position=403	aa_ref_seq=K	codon_new_seq=AGG	codon_position=2	codon_ref_seq=AAG	gene_list=yhdP	gene_name=yhdP	gene_position=1208	gene_product=conserved membrane protein, predicted transporter	gene_strand=<	locus_tag=ECB_03105	snp_type=nonsynonymous
SNP	2050	1379	REL606	3339313	C	aa_new_seq=S	aa_position=51	aa_ref_seq=Y	codon_new_seq=TCT	codon_position=2	codon_ref_seq=TAT	gene_list=fis	gene_name=fis	gene_position=152	gene_product=DNA-binding protein Fis	gene_strand=>	locus_tag=ECB_03119	snp_type=nonsynonymous
SNP	2051	1380	REL606	3345160	G	aa_new_seq=S	aa_position=746	aa_ref_seq=N	codon_new_seq=AGT	codon_position=2	codon_ref_seq=AAT	gene_list=acrF	gene_name=acrF	gene_position=2237	gene_product=multidrug efflux system protein	gene_strand=>	locus_tag=ECB_03124	snp_type=nonsynonymous
SNP	2052	1387	REL606	3351577	G	gene_list=rrfD	gene_name=rrfD	gene_position=noncoding (103/120 nt)	gene_product=5S ribosomal RNA	gene_strand=<	locus_tag=ECB_r00008	snp_type=noncoding
SNP	2053	1391	REL606	3358865	A	aa_new_seq=D	aa_position=152	aa_ref_seq=D	codon_new_seq=GAT	codon_position=3	codon_ref_seq=GAC	gene_list=yrdC	gene_name=yrdC	gene_position=456	gene_product=predicted ribosome maturation factor	gene_strand=<	locus_tag=ECB_03133	snp_type=synonymous
INS	2054	1392,1393	REL606	3360899	CC	gene_list=smf	gene_name=smf	gene_position=coding (567/1125 nt)	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_03136
SNP	2055	1394	REL606	3373583	T	aa_new_seq=K	aa_position=155	aa_ref_seq=E	codon_new_seq=AAG	codon_position=1	codon_ref_seq=GAG	gene_list=rplF	gene_name=rplF	gene_position=463	gene_product=50S ribosomal protein L6	gene_strand=<	locus_tag=ECB_03156	snp_type=nonsynonymous
SNP	2056	1400	REL606	3399407	G	aa_new_seq=R	aa_position=671	aa_ref_seq=R	codon_new_seq=CGC	codon_position=3	codon_ref_seq=CGT	gene_list=fusA	gene_name=fusA	gene_position=2013	gene_product=elongation factor EF-2	gene_strand=<	locus_tag=ECB_03191	snp_type=synonymous
SNP	2057	1401	REL606	3401754	A	aa_new_seq=L	aa_position=78	aa_ref_seq=R	codon_new_seq=CTC	codon_position=2	codon_ref_seq=CGC	gene_list=rpsG	gene_name=rpsG	gene_position=233	gene_product=30S ribosomal protein S7	gene_strand=<	locus_tag=ECB_03192	snp_type=nonsynonymous
SNP	2058	1407	REL606	3445742	A	aa_new_seq=C	aa_position=83	aa_ref_seq=R	codon_new_seq=TGC	codon_position=1	codon_ref_seq=CGC	gene_list=damX	gene_name=damX	gene_position=247	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_03240	snp_type=nonsynonymous
SNP	2059	1408	REL606	3461642	A	aa_new_seq=G	aa_position=47	aa_ref_seq=G	codon_new_seq=GGA	codon_position=3	codon_ref_seq=GGG	gene_list=pckA	gene_name=pckA	gene_position=141	gene_product=phosphoenolpyruvate carboxykinase	gene_strand=>	locus_tag=ECB_03255	snp_type=synonymous
SNP	2060	1409	REL606	3463900	T	aa_new_seq=H	aa_position=218	aa_ref_seq=R	codon_new_seq=CAC	codon_position=2	codon_ref_seq=CGC	gene_list=envZ	gene_name=envZ	gene_position=653	gene_product=osmolarity sensor protein	gene_strand=<	locus_tag=ECB_03256	snp_type=nonsynonymous
SNP	2061	1412	REL606	3481820	G	aa_new_seq=A	aa_position=46	aa_ref_seq=T	codon_new_seq=GCC	codon_position=1	codon_ref_seq=ACC	gene_list=malT	gene_name=malT	gene_position=136	gene_product=transcriptional regulator MalT	gene_strand=>	locus_tag=ECB_03270	snp_type=nonsynonymous
SNP	2062	1413	REL606	3488669	C	aa_new_seq=A	aa_position=180	aa_ref_seq=S	codon_new_seq=GCG	codon_position=1	codon_ref_seq=TCG	gene_list=glpR	gene_name=glpR	gene_position=538	gene_product=DNA-binding transcriptional repressor	gene_strand=<	locus_tag=ECB_03274	snp_type=nonsynonymous
SNP	2063	1414	REL606	3489876	T	aa_new_seq=T	aa_position=60	aa_ref_seq=A	codon_new_seq=ACA	codon_position=1	codon_ref_seq=GCA	gene_list=glpG	gene_name=glpG	gene_position=178	gene_product=predicted intramembrane serine protease	gene_strand=<	locus_tag=ECB_03275	snp_type=nonsynonymous
SNP	2064	1415	REL606	3499794	G	aa_new_seq=P	aa_position=337	aa_ref_seq=L	codon_new_seq=CCT	codon_position=2	codon_ref_seq=CTT	gene_list=glgC	gene_name=glgC	gene_position=1010	gene_product=glucose-1-phosphate adenylyltransferase	gene_strand=<	locus_tag=ECB_03282	snp_type=nonsynonymous
MOB	1783	3,5	REL606	3517306	IS186	1	8	del_end=2	gene_list=ggt	gene_name=ggt	gene_position=coding (187-194/1743 nt)	gene_product=gamma-glutamyltranspeptidase periplasmic precursor	gene_strand=<	locus_tag=ECB_03296
SNP	2065	1417	REL606	3536603	A	aa_new_seq=V	aa_position=55	aa_ref_seq=V	codon_new_seq=GTA	codon_position=3	codon_ref_seq=GTG	gene_list=yhhN	gene_name=yhhN	gene_position=165	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_03317	snp_type=synonymous
SNP	2066	1440	REL606	3573640	A	aa_new_seq=G	aa_position=61	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=yhiQ	gene_name=yhiQ	gene_position=183	gene_product=predicted SAM-dependent methyltransferase	gene_strand=<	locus_tag=ECB_03346	snp_type=synonymous
SNP	2067	1449	REL606	3612959	T	gene_name=dctA/yhjK	gene_position=intergenic (-20/+163)	gene_product=C4-dicarboxylate transport protein/predicted diguanylate cyclase	locus_tag=ECB_03376/ECB_03377	snp_type=intergenic
SNP	2068	1450	REL606	3616490	T	aa_new_seq=N	aa_position=726	aa_ref_seq=D	codon_new_seq=AAT	codon_position=1	codon_ref_seq=GAT	gene_list=bcsC	gene_name=bcsC	gene_position=2176	gene_product=cellulose synthase subunit	gene_strand=<	locus_tag=ECB_03378	snp_type=nonsynonymous
SNP	2069	1465	REL606	3635762	C	aa_new_seq=A	aa_position=163	aa_ref_seq=T	codon_new_seq=GCG	codon_position=1	codon_ref_seq=ACG	gene_list=dppB	gene_name=dppB	gene_position=487	gene_product=dipeptide transporter	gene_strand=<	locus_tag=ECB_03394	snp_type=nonsynonymous
MOB	1784	31,15	REL606	3680780	IS150	1	3	gene_list=sgbE	gene_name=sgbE	gene_position=coding (239-241/696 nt)	gene_product=L-ribulose-5-phosphate 4-epimerase	gene_strand=>	locus_tag=ECB_03435
SNP	2070	1471	REL606	3686883	G	aa_new_seq=A	aa_position=67	aa_ref_seq=T	codon_new_seq=GCC	codon_position=1	codon_ref_seq=ACC	gene_list=yiaU	gene_name=yiaU	gene_position=199	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_03440	snp_type=nonsynonymous
DEL	1767	1492,58	REL606	3741966	177	gene_list=waaT	gene_name=waaT	gene_position=pseudogene (224-400/405 nt)	gene_product=UDP-galactose:(Glucosyl) LPS alpha1,2-galactosyltransferase WaaT	gene_strand=<	locus_tag=ECB_03483	mediated=IS1	snp_type=pseudogene
DEL	2071	1497	REL606	3754163	1	gene_name=pyrE/rph	gene_position=intergenic (-40/+26)	gene_product=orotate phosphoribosyltransferase/ribonuclease PH	locus_tag=ECB_03499/ECB_03500	snp_type=intergenic
SNP	2072	1498	REL606	3758443	T	aa_new_seq=D	aa_position=362	aa_ref_seq=G	codon_new_seq=GAT	codon_position=2	codon_ref_seq=GGT	gene_list=yicF	gene_name=yicF	gene_position=1085	gene_product=NAD-dependent DNA ligase LigB	gene_strand=<	locus_tag=ECB_03504	snp_type=nonsynonymous
SNP	2073	1499	REL606	3763734	G	aa_new_seq=L	aa_position=56	aa_ref_seq=L	codon_new_seq=CTG	codon_position=3	codon_ref_seq=CTA	gene_list=recG	gene_name=recG	gene_position=168	gene_product=ATP-dependent DNA helicase	gene_strand=>	locus_tag=ECB_03509	snp_type=synonymous
SNP	2074	1500	REL606	3793623	A	aa_new_seq=A	aa_position=180	aa_ref_seq=A	codon_new_seq=GCA	codon_position=3	codon_ref_seq=GCG	gene_list=insI	gene_name=insI	gene_position=540	gene_product=IS30 transposase	gene_strand=>	locus_tag=ECB_03536	snp_type=synonymous
SNP	2075	1504	REL606	3822371	A	aa_new_seq=I	aa_position=19	aa_ref_seq=I	codon_new_seq=ATT	codon_position=3	codon_ref_seq=ATC	gene_list=glvG	gene_name=glvG	gene_position=57	gene_product=predicted 6-phospho-beta-glucosidase	gene_strand=<	locus_tag=ECB_03565	snp_type=synonymous
SNP	2076	1505	REL606	3837268	A	aa_new_seq=M	aa_position=16	aa_ref_seq=M	codon_new_seq=TTG	codon_position=1	codon_ref_seq=CTG	gene_list=yidA	gene_name=yidA	gene_position=46	gene_product=predicted hydrolase	gene_strand=<	locus_tag=ECB_03580	snp_type=synonymous
SNP	2077	1506	REL606	3862134	A	aa_new_seq=G	aa_position=152	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=yieC	gene_name=yieC	gene_position=456	gene_product=carbohydrate-specific outer membrane porin, cryptic	gene_strand=<	locus_tag=ECB_03604	snp_type=synonymous
SNP	2078	1507	REL606	3864940	A	aa_new_seq=G	aa_position=342	aa_ref_seq=G	codon_new_seq=GGT	codon_position=3	codon_ref_seq=GGC	gene_list=bglF	gene_name=bglF	gene_position=1026	gene_product=fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component	gene_strand=<	locus_tag=ECB_03606	snp_type=synonymous
SNP	2079	1508	REL606	3867544	G	aa_new_seq=H	aa_position=134	aa_ref_seq=H	codon_new_seq=CAC	codon_position=3	codon_ref_seq=CAT	gene_list=phoU	gene_name=phoU	gene_position=402	gene_product=negative regulator of PhoR/PhoB two-component regulator	gene_strand=<	locus_tag=ECB_03608	snp_type=synonymous
SNP	2080	1509	REL606	3869813	A	aa_new_seq=V	aa_position=318	aa_ref_seq=A	codon_new_seq=GTA	codon_position=2	codon_ref_seq=GCA	gene_list=pstC	gene_name=pstC	gene_position=953	gene_product=phosphate transporter subunit	gene_strand=<	locus_tag=ECB_03611	snp_type=nonsynonymous
SNP	2081	1510	REL606	3872302	A	aa_new_seq=I	aa_position=578	aa_ref_seq=T	codon_new_seq=ATC	codon_position=2	codon_ref_seq=ACC	gene_list=glmS	gene_name=glmS	gene_position=1733	gene_product=D-fructose-6-phosphate amidotransferase	gene_strand=<	locus_tag=ECB_03613	snp_type=nonsynonymous
SNP	2082	1511	REL606	3874844	A	aa_new_seq=S	aa_position=241	aa_ref_seq=S	codon_new_seq=TCT	codon_position=3	codon_ref_seq=TCC	gene_list=glmU	gene_name=glmU	gene_position=723	gene_product=bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	gene_strand=<	locus_tag=ECB_03614	snp_type=synonymous
SNP	2083	1514	REL606	3892335	T	aa_new_seq=V	aa_position=220	aa_ref_seq=A	codon_new_seq=GTA	codon_position=2	codon_ref_seq=GCA	gene_list=kup	gene_name=kup	gene_position=659	gene_product=potassium transporter	gene_strand=>	locus_tag=ECB_03631	snp_type=nonsynonymous
DEL	2084	1515,1516	REL606	3893549	2	gene_name=kup/insJ-5	gene_position=intergenic (+4/-51)	gene_product=potassium transporter/IS150 hypothetical protein	locus_tag=ECB_03631/ECB_03632	snp_type=intergenic
DEL	1768	1517,39	REL606	3894997	6460	gene_name=rbsD–[yieO]	gene_product=rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]	locus_tag=[ECB_03634]–[ECB_03640]	mediated=IS150
SNP	2085	1523	REL606	3909807	T	gene_name=hdfR/yifE	gene_position=intergenic (-40/-79)	gene_product=transcriptional regulator HdfR/hypothetical protein	locus_tag=ECB_03642/ECB_03643	snp_type=intergenic
DEL	2086	1524	REL606	3911972	1	gene_name=yifB/ilvL	gene_position=intergenic (-173/-150)	gene_product=predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide	locus_tag=ECB_03644/ECB_03645	snp_type=intergenic
DEL	2087	1525	REL606	3917126	1	gene_list=ilvD	gene_name=ilvD	gene_position=coding (1847/1851 nt)	gene_product=dihydroxy-acid dehydratase	gene_strand=>	locus_tag=ECB_03649
SNP	2088	1526	REL606	3917933	T	aa_new_seq=S	aa_position=267	aa_ref_seq=S	codon_new_seq=AGT	codon_position=3	codon_ref_seq=AGC	gene_list=ilvA	gene_name=ilvA	gene_position=801	gene_product=threonine dehydratase	gene_strand=>	locus_tag=ECB_03650	snp_type=synonymous
SNP	2089	1527	REL606	3920984	T	aa_new_seq=C	aa_position=405	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=ilvC	gene_name=ilvC	gene_position=1213	gene_product=ketol-acid reductoisomerase	gene_strand=>	locus_tag=ECB_03652	snp_type=nonsynonymous
SNP	2090	1537	REL606	3999248	C	aa_new_seq=G	aa_position=184	aa_ref_seq=G	codon_new_seq=GGC	codon_position=3	codon_ref_seq=GGT	gene_list=ubiB	gene_name=ubiB	gene_position=552	gene_product=putative ubiquinone biosynthesis protein UbiB	gene_strand=>	locus_tag=ECB_03728	snp_type=synonymous
SNP	2091	1553	REL606	4023780	G	aa_new_seq=A	aa_position=429	aa_ref_seq=T	codon_new_seq=GCA	codon_position=1	codon_ref_seq=ACA	gene_list=yihF	gene_name=yihF	gene_position=1285	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_03747	snp_type=nonsynonymous
SNP	2092	1554	REL606	4046586	A	aa_new_seq=H	aa_position=304	aa_ref_seq=Q	codon_new_seq=CAT	codon_position=3	codon_ref_seq=CAA	gene_list=yihQ	gene_name=yihQ	gene_position=912	gene_product=alpha-glucosidase	gene_strand=<	locus_tag=ECB_03763	snp_type=nonsynonymous
SNP	2093	1559	REL606	4100183	G	aa_new_seq=P	aa_position=350	aa_ref_seq=S	codon_new_seq=CCT	codon_position=1	codon_ref_seq=TCT	gene_list=hslU	gene_name=hslU	gene_position=1048	gene_product=ATP-dependent protease ATP-binding subunit	gene_strand=<	locus_tag=ECB_03816	snp_type=nonsynonymous
SNP	2094	1560	REL606	4107018	A	aa_new_seq=P	aa_position=123	aa_ref_seq=P	codon_new_seq=CCT	codon_position=3	codon_ref_seq=CCA	gene_list=ECB_03822	gene_name=ECB_03822	gene_position=369	gene_product=putative outer membrane lipoprotein	gene_strand=<	locus_tag=ECB_03822	snp_type=synonymous
MOB	1785	50,47	REL606	4110237	IS150	-1	3	gene_list=metL	gene_name=metL	gene_position=coding (296-298/2433 nt)	gene_product=bifunctional aspartate kinase II/homoserine dehydrogenase II	gene_strand=>	locus_tag=ECB_03826
SNP	2095	1561	REL606	4110809	G	aa_new_seq=A	aa_position=290	aa_ref_seq=T	codon_new_seq=GCG	codon_position=1	codon_ref_seq=ACG	gene_list=metL	gene_name=metL	gene_position=868	gene_product=bifunctional aspartate kinase II/homoserine dehydrogenase II	gene_strand=>	locus_tag=ECB_03826	snp_type=nonsynonymous
SNP	2096	1562	REL606	4110980	T	aa_new_seq=C	aa_position=347	aa_ref_seq=R	codon_new_seq=TGC	codon_position=1	codon_ref_seq=CGC	gene_list=metL	gene_name=metL	gene_position=1039	gene_product=bifunctional aspartate kinase II/homoserine dehydrogenase II	gene_strand=>	locus_tag=ECB_03826	snp_type=nonsynonymous
SNP	2097	1563	REL606	4142669	A	aa_new_seq=W	aa_position=155	aa_ref_seq=R	codon_new_seq=TGG	codon_position=1	codon_ref_seq=CGG	gene_list=trmA	gene_name=trmA	gene_position=463	gene_product=tRNA (uracil-5-)-methyltransferase	gene_strand=<	locus_tag=ECB_03850	snp_type=nonsynonymous
SNP	2098	1572	REL606	4154522	G	aa_new_seq=P	aa_position=39	aa_ref_seq=L	codon_new_seq=CCC	codon_position=2	codon_ref_seq=CTC	gene_list=coaA	gene_name=coaA	gene_position=116	gene_product=pantothenate kinase	gene_strand=<	locus_tag=ECB_03855	snp_type=nonsynonymous
SNP	2099	1579	REL606	4163775	T	aa_new_seq=C	aa_position=974	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=rpoB	gene_name=rpoB	gene_position=2920	gene_product=DNA-directed RNA polymerase subunit beta	gene_strand=>	locus_tag=ECB_03863	snp_type=nonsynonymous
SNP	2100	1580	REL606	4165619	A	aa_new_seq=H	aa_position=220	aa_ref_seq=R	codon_new_seq=CAT	codon_position=2	codon_ref_seq=CGT	gene_list=rpoC	gene_name=rpoC	gene_position=659	gene_product=DNA-directed RNA polymerase subunit beta'	gene_strand=>	locus_tag=ECB_03864	snp_type=nonsynonymous
SNP	2101	1581	REL606	4180200	G	aa_new_seq=G	aa_position=8	aa_ref_seq=V	codon_new_seq=GGG	codon_position=2	codon_ref_seq=GTG	gene_list=yjaH	gene_name=yjaH	gene_position=23	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_03878	snp_type=nonsynonymous
SNP	2102	1587	REL606	4196682	A	aa_new_seq=*	aa_position=43	aa_ref_seq=C	codon_new_seq=TGA	codon_position=3	codon_ref_seq=TGC	gene_list=aceA	gene_name=aceA	gene_position=129	gene_product=isocitrate lyase	gene_strand=>	locus_tag=ECB_03887	snp_type=nonsynonymous
SNP	2103	1590	REL606	4201958	C	aa_new_seq=R	aa_position=201	aa_ref_seq=L	codon_new_seq=CGC	codon_position=2	codon_ref_seq=CTC	gene_list=iclR	gene_name=iclR	gene_position=602	gene_product=DNA-binding transcriptional repressor	gene_strand=<	locus_tag=ECB_03890	snp_type=nonsynonymous
SNP	2104	1591	REL606	4207843	A	aa_new_seq=A	aa_position=394	aa_ref_seq=A	codon_new_seq=GCA	codon_position=3	codon_ref_seq=GCG	gene_list=yjbB	gene_name=yjbB	gene_position=1182	gene_product=predicted transporter	gene_strand=>	locus_tag=ECB_03892	snp_type=synonymous
SNP	2105	1592	REL606	4212600	A	gene_name=lysC/pgi	gene_position=intergenic (-436/-89)	gene_product=aspartate kinase III/glucose-6-phosphate isomerase	locus_tag=ECB_03896/ECB_03897	snp_type=intergenic
INS	2106	1593	REL606	4214845	A	gene_list=yjbE	gene_name=yjbE	gene_position=coding (9/243 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_03898
SNP	2107	1594	REL606	4225597	T	gene_name=malE/malK	gene_position=intergenic (-246/-119)	gene_product=maltose ABC transporter periplasmic protein/fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein	locus_tag=ECB_03906/ECB_03907	snp_type=intergenic
SNP	2108	1596	REL606	4266498	A	gene_name=acs/nrfA	gene_position=intergenic (-194/-199)	gene_product=acetyl-coenzyme A synthetase/nitrite reductase, formate-dependent, cytochrome	locus_tag=ECB_03941/ECB_03942	snp_type=intergenic
SNP	2109	1601	REL606	4285933	G	aa_new_seq=T	aa_position=230	aa_ref_seq=I	codon_new_seq=ACT	codon_position=2	codon_ref_seq=ATT	gene_list=alsK	gene_name=alsK	gene_position=689	gene_product=D-allose kinase	gene_strand=<	locus_tag=ECB_03956	snp_type=nonsynonymous
SNP	2110	1683	REL606	4347725	T	aa_new_seq=L	aa_position=114	aa_ref_seq=P	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CCG	gene_list=fxsA	gene_name=fxsA	gene_position=341	gene_product=inner membrane protein	gene_strand=>	locus_tag=ECB_04010	snp_type=nonsynonymous
DEL	2111	1684	REL606	4349289	1	gene_name=yjeH/groES	gene_position=intergenic (-156/-120)	gene_product=predicted transporter/co-chaperonin GroES	locus_tag=ECB_04011/ECB_04012	snp_type=intergenic
SNP	2112	1685	REL606	4363338	A	aa_new_seq=G	aa_position=263	aa_ref_seq=G	codon_new_seq=GGA	codon_position=3	codon_ref_seq=GGC	gene_list=yjeM	gene_name=yjeM	gene_position=789	gene_product=predicted transporter	gene_strand=>	locus_tag=ECB_04028	snp_type=synonymous
SNP	2113	1690	REL606	4378042	G	aa_new_seq=Q	aa_position=212	aa_ref_seq=Q	codon_new_seq=CAG	codon_position=3	codon_ref_seq=CAA	gene_list=miaA	gene_name=miaA	gene_position=636	gene_product=tRNA delta(2)-isopentenylpyrophosphate transferase	gene_strand=>	locus_tag=ECB_04038	snp_type=synonymous
SNP	2114	1691	REL606	4380609	T	aa_new_seq=A	aa_position=139	aa_ref_seq=A	codon_new_seq=GCT	codon_position=3	codon_ref_seq=GCC	gene_list=hflK	gene_name=hflK	gene_position=417	gene_product=modulator for HflB protease specific for phage lambda cII repressor	gene_strand=>	locus_tag=ECB_04041	snp_type=synonymous
SNP	2115	1692	REL606	4382294	T	aa_new_seq=A	aa_position=280	aa_ref_seq=A	codon_new_seq=GCT	codon_position=3	codon_ref_seq=GCC	gene_list=hflC	gene_name=hflC	gene_position=840	gene_product=modulator for HflB protease specific for phage lambda cII repressor	gene_strand=>	locus_tag=ECB_04042	snp_type=synonymous
INS	2116	1696	REL606	4397516	T	gene_list=yjfR	gene_name=yjfR	gene_position=coding (265/1065 nt)	gene_product=predicted L-ascorbate 6-phosphate lactonase	gene_strand=<	locus_tag=ECB_04059
SNP	2117	1697	REL606	4406865	C	aa_new_seq=T	aa_position=464	aa_ref_seq=T	codon_new_seq=ACG	codon_position=3	codon_ref_seq=ACA	gene_list=ECB_04072	gene_name=ECB_04072	gene_position=1392	gene_product=putative oxidoreductase	gene_strand=<	locus_tag=ECB_04072	snp_type=synonymous
MOB	1786	8,38	REL606	4415710	IS150	-1	3	gene_list=cycA	gene_name=cycA	gene_position=coding (848-850/1413 nt)	gene_product=D-alanine/D-serine/glycine transporter	gene_strand=>	locus_tag=ECB_04080
SNP	2118	1698	REL606	4420451	G	aa_new_seq=A	aa_position=370	aa_ref_seq=V	codon_new_seq=GCG	codon_position=2	codon_ref_seq=GTG	gene_list=cpdB	gene_name=cpdB	gene_position=1109	gene_product=bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein	gene_strand=<	locus_tag=ECB_04085	snp_type=nonsynonymous
DEL	2119	1699,1700	REL606	4431394	2	gene_list=ytfN	gene_name=ytfN	gene_position=coding (3526-3527/3780 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_04092
SNP	2120	1701	REL606	4433347	G	aa_new_seq=E	aa_position=46	aa_ref_seq=K	codon_new_seq=GAA	codon_position=1	codon_ref_seq=AAA	gene_list=ytfQ	gene_name=ytfQ	gene_position=136	gene_product=predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily	gene_strand=>	locus_tag=ECB_04096	snp_type=nonsynonymous
SNP	2121	1702	REL606	4435201	G	aa_new_seq=G	aa_position=298	aa_ref_seq=G	codon_new_seq=GGG	codon_position=3	codon_ref_seq=GGA	gene_list=ytfR	gene_name=ytfR	gene_position=894	gene_product=predicted sugar transporter subunit: ATP-binding component of ABC superfamily	gene_strand=>	locus_tag=ECB_04097	snp_type=synonymous
SNP	2122	1703	REL606	4439527	A	aa_new_seq=T	aa_position=165	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=mpl	gene_name=mpl	gene_position=493	gene_product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	gene_strand=>	locus_tag=ECB_04101	snp_type=nonsynonymous
INS	2123	1704	REL606	4471806	C	gene_list=yjgR	gene_name=yjgR	gene_position=coding (1485/1503 nt)	gene_product=predicted ATPase	gene_strand=<	locus_tag=ECB_04129
SNP	2124	1705	REL606	4472216	T	aa_new_seq=S	aa_position=359	aa_ref_seq=G	codon_new_seq=AGC	codon_position=1	codon_ref_seq=GGC	gene_list=yjgR	gene_name=yjgR	gene_position=1075	gene_product=predicted ATPase	gene_strand=<	locus_tag=ECB_04129	snp_type=nonsynonymous
INS	2125	1706	REL606	4475811	G	gene_name=idnT/idnO	gene_position=intergenic (-59/+4)	gene_product=L-idonate and D-gluconate transporter/gluconate 5-dehydrogenase	locus_tag=ECB_04131/ECB_04132	snp_type=intergenic
SNP	2126	1707	REL606	4485740	A	gene_name=insG/yjhB	gene_position=intergenic (-417/-210)	gene_product=IS4 predicted transposase/predicted transporter	locus_tag=ECB_04140/ECB_04141	snp_type=intergenic
SNP	2127	1709	REL606	4491013	G	aa_new_seq=T	aa_position=553	aa_ref_seq=I	codon_new_seq=ACC	codon_position=2	codon_ref_seq=ATC	gene_list=ECB_04148	gene_name=ECB_04148	gene_position=1658	gene_product=secondary glycine betaine transporter BetU	gene_strand=<	locus_tag=ECB_04148	snp_type=nonsynonymous
SNP	2128	1717	REL606	4510208	G	aa_new_seq=S	aa_position=58	aa_ref_seq=S	codon_new_seq=AGC	codon_position=3	codon_ref_seq=AGT	gene_list=sgcC	gene_name=sgcC	gene_position=174	gene_product=predicted phosphotransferase enzyme IIC component	gene_strand=<	locus_tag=ECB_04169	snp_type=synonymous
DEL	1769	1744,12	REL606	4522339	38944	gene_name=[fimB]–[hsdR]	gene_product=<i><b>36 genes</b><BR>[fimB], fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH, gntP, uxuA, uxuB, uxuR, yjiC, yjiD, yjiE, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, yjiL, yjiM, yjiN, yjiO, yjiPQ, insA-28, insB-28, yjiV, mcrC, mcrB, yjiW, hsdS, hsdM, [hsdR]</i>	locus_tag=[ECB_04179]–[ECB_04216]	mediated=IS1
SNP	2129	1746	REL606	4575416	G	aa_new_seq=H	aa_position=193	aa_ref_seq=Y	codon_new_seq=CAT	codon_position=1	codon_ref_seq=TAT	gene_list=hpaH	gene_name=hpaH	gene_position=577	gene_product=2-oxo-hept-3-ene-1,7-dioate hydratase	gene_strand=<	locus_tag=ECB_04226	snp_type=nonsynonymous
SNP	2130	1747	REL606	4579259	T	aa_new_seq=H	aa_position=266	aa_ref_seq=R	codon_new_seq=CAC	codon_position=2	codon_ref_seq=CGC	gene_list=hpaG	gene_name=hpaG	gene_position=797	gene_product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase	gene_strand=<	locus_tag=ECB_04230	snp_type=nonsynonymous
SNP	2131	1748	REL606	4583729	C	aa_new_seq=A	aa_position=77	aa_ref_seq=T	codon_new_seq=GCC	codon_position=1	codon_ref_seq=ACC	gene_list=yjiZ	gene_name=yjiZ	gene_position=229	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_04233	snp_type=nonsynonymous
MOB	1787	32,46	REL606	4588156	IS150	1	3	gene_list=mdoB	gene_name=mdoB	gene_position=coding (518-520/2292 nt)	gene_product=phosphoglycerol transferase I	gene_strand=<	locus_tag=ECB_04236
SNP	2132	1749	REL606	4588672	G	aa_new_seq=P	aa_position=2	aa_ref_seq=S	codon_new_seq=CCA	codon_position=1	codon_ref_seq=TCA	gene_list=mdoB	gene_name=mdoB	gene_position=4	gene_product=phosphoglycerol transferase I	gene_strand=<	locus_tag=ECB_04236	snp_type=nonsynonymous
SNP	2133	1750	REL606	4588888	T	gene_name=mdoB/yjjA	gene_position=intergenic (-213/+41)	gene_product=phosphoglycerol transferase I/hypothetical protein	locus_tag=ECB_04236/ECB_04237	snp_type=intergenic
SNP	2134	1751	REL606	4593186	A	aa_new_seq=H	aa_position=159	aa_ref_seq=R	codon_new_seq=CAC	codon_position=2	codon_ref_seq=CGC	gene_list=yjjQ	gene_name=yjjQ	gene_position=476	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_04242	snp_type=nonsynonymous
SNP	2135	1756	REL606	4603391	T	aa_new_seq=V	aa_position=226	aa_ref_seq=A	codon_new_seq=GTT	codon_position=2	codon_ref_seq=GCT	gene_list=yjjV	gene_name=yjjV	gene_position=677	gene_product=predicted DNase	gene_strand=>	locus_tag=ECB_04254	snp_type=nonsynonymous
MOB	1788	21,9	REL606	4613020	IS150	1	0	gene_name=smp/serB	gene_position=intergenic (-17/-90)	gene_product=hypothetical protein/3-phosphoserine phosphatase	ins_start=TT	locus_tag=ECB_04263/ECB_04264	snp_type=intergenic
SNP	2136	1761	REL606	4616538	C	aa_new_seq=S	aa_position=337	aa_ref_seq=Y	codon_new_seq=TCC	codon_position=2	codon_ref_seq=TAC	gene_list=nadR	gene_name=nadR	gene_position=1010	gene_product=nicotinamide-nucleotide adenylyltransferase	gene_strand=>	locus_tag=ECB_04266	snp_type=nonsynonymous
INS	2137	1762	REL606	4626007	C	gene_list=creC	gene_name=creC	gene_position=coding (1152/1425 nt)	gene_product=sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon	gene_strand=>	locus_tag=ECB_04275
SNP	2138	1763	REL606	4629225	T	aa_new_seq=S	aa_position=42	aa_ref_seq=P	codon_new_seq=TCA	codon_position=1	codon_ref_seq=CCA	gene_list=lasT	gene_name=lasT	gene_position=124	gene_product=predicted rRNA methyltransferase	gene_strand=>	locus_tag=ECB_04279	snp_type=nonsynonymous
RA	608		REL606	1612	0	A	G	frequency=1	new_cov=14/14	quality=82.5	ref_cov=1/0	tot_cov=16/14
RA	609		REL606	9972	0	T	G	frequency=1	new_cov=12/12	quality=74.9	ref_cov=0/0	tot_cov=12/12
RA	610		REL606	10563	0	G	A	frequency=1	new_cov=9/13	quality=57.4	ref_cov=0/0	tot_cov=9/13
RA	612		REL606	15389	0	A	C	frequency=1	new_cov=7/0	quality=-4.0	ref_cov=1/3	reject=EVALUE	tot_cov=8/3
RA	615		REL606	16966	1	.	G	frequency=1	new_cov=7/14	quality=47.8	ref_cov=0/4	tot_cov=7/18
RA	618		REL606	38191	0	T	.	frequency=1	new_cov=5/5	quality=44.2	ref_cov=0/0	tot_cov=5/5
RA	619		REL606	43519	0	A	G	frequency=1	new_cov=11/17	quality=83.6	ref_cov=1/0	tot_cov=12/17
RA	620		REL606	62118	0	A	G	frequency=1	new_cov=2/7	quality=23.8	ref_cov=0/0	tot_cov=2/7
RA	621		REL606	66230	1	.	T	frequency=1	new_cov=3/9	quality=27.4	ref_cov=0/0	tot_cov=3/9
RA	627		REL606	80113	0	A	G	frequency=1	new_cov=6/14	quality=59.6	ref_cov=0/1	tot_cov=6/15
RA	628		REL606	81158	0	A	C	frequency=1	new_cov=16/13	quality=81.9	ref_cov=0/1	tot_cov=16/14
RA	631		REL606	104597	0	C	T	frequency=1	new_cov=8/10	quality=41.3	ref_cov=1/0	tot_cov=9/10
RA	632		REL606	105581	0	G	A	frequency=1	new_cov=9/15	quality=69.0	ref_cov=0/0	tot_cov=9/15
RA	633		REL606	116742	0	T	C	frequency=1	new_cov=7/14	quality=56.8	ref_cov=0/1	tot_cov=7/15
RA	634		REL606	138495	0	C	T	frequency=1	new_cov=11/9	quality=50.2	ref_cov=0/0	tot_cov=11/9
RA	636		REL606	161273	0	A	G	frequency=1	new_cov=10/12	quality=69.0	ref_cov=0/0	tot_cov=10/12
RA	638		REL606	164909	0	C	T	frequency=1	new_cov=15/12	quality=66.3	ref_cov=0/0	tot_cov=15/12
RA	639		REL606	165565	0	A	C	frequency=1	new_cov=0/3	quality=-4.9	ref_cov=0/1	reject=EVALUE	tot_cov=0/5
RA	641		REL606	175429	0	A	G	frequency=1	new_cov=20/7	quality=80.1	ref_cov=0/0	tot_cov=20/7
RA	642		REL606	189171	0	C	T	frequency=1	new_cov=14/8	quality=46.0	ref_cov=1/1	tot_cov=15/9
RA	643		REL606	216480	0	C	T	frequency=1	new_cov=14/14	quality=75.6	ref_cov=0/0	tot_cov=14/14
RA	644		REL606	216601	0	G	A	frequency=1	new_cov=10/13	quality=55.1	ref_cov=0/0	tot_cov=10/13
RA	645		REL606	220338	0	C	T	frequency=1	new_cov=19/19	quality=105.8	ref_cov=0/0	tot_cov=19/19
RA	651		REL606	235408	0	T	C	frequency=1	new_cov=9/12	quality=63.5	ref_cov=0/0	tot_cov=9/12
RA	654		REL606	242203	0	G	.	frequency=1	new_cov=6/3	quality=38.6	ref_cov=0/0	tot_cov=6/3
RA	666		REL606	247796	0	T	C	frequency=1	new_cov=9/8	quality=51.9	ref_cov=0/0	tot_cov=9/8
RA	669		REL606	273276	0	G	.	frequency=1	new_cov=5/8	quality=61.3	ref_cov=0/0	tot_cov=5/8
RA	670		REL606	281923	0	G	T	frequency=1	new_cov=11/10	quality=57.3	ref_cov=0/0	tot_cov=11/10
RA	675		REL606	314679	0	C	T	frequency=1	new_cov=18/18	quality=94.2	ref_cov=0/0	tot_cov=19/19
RA	682		REL606	352377	1	.	G	frequency=1	new_cov=6/3	quality=21.3	ref_cov=0/0	tot_cov=6/3
RA	684		REL606	357611	0	T	C	frequency=1	new_cov=8/14	quality=60.3	ref_cov=1/0	tot_cov=10/14
RA	685		REL606	365839	0	C	T	frequency=1	new_cov=13/8	quality=59.6	ref_cov=0/0	tot_cov=13/8
RA	686		REL606	371056	0	G	T	frequency=1	new_cov=14/9	quality=56.7	ref_cov=0/0	tot_cov=14/9
RA	688		REL606	393237	0	C	T	frequency=1	new_cov=16/8	quality=53.0	ref_cov=0/0	tot_cov=16/8
RA	689		REL606	398061	0	G	C	frequency=1	new_cov=4/11	quality=40.6	ref_cov=0/0	tot_cov=4/11
RA	691		REL606	426451	0	A	G	frequency=1	new_cov=10/12	quality=66.0	ref_cov=0/0	tot_cov=10/12
RA	694		REL606	433366	1	.	T	frequency=1	new_cov=4/9	quality=31.7	ref_cov=0/0	tot_cov=4/9
RA	695		REL606	447290	0	T	C	frequency=1	new_cov=15/8	quality=69.9	ref_cov=0/1	tot_cov=15/9
RA	696		REL606	451184	1	.	A	frequency=1	new_cov=2/10	quality=27.2	ref_cov=0/1	tot_cov=2/11
RA	699		REL606	462346	0	C	T	frequency=1	new_cov=6/10	quality=40.1	ref_cov=0/0	tot_cov=6/11
RA	700		REL606	472751	0	C	T	frequency=1	new_cov=12/21	quality=90.1	ref_cov=0/0	tot_cov=12/21
RA	701		REL606	473904	1	.	G	frequency=1	new_cov=2/4	quality=14.1	ref_cov=0/0	tot_cov=2/4
RA	702		REL606	473904	2	.	C	frequency=1	new_cov=2/4	quality=10.6	ref_cov=0/0	tot_cov=2/4
RA	705		REL606	493264	0	A	G	frequency=1	new_cov=20/10	quality=84.9	ref_cov=1/0	tot_cov=22/10
RA	706		REL606	498181	0	C	A	frequency=1	new_cov=0/1	quality=-6.6	ref_cov=0/1	reject=EVALUE	tot_cov=0/2
RA	707		REL606	498187	0	G	C	frequency=1	new_cov=0/2	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	708		REL606	498193	0	G	C	frequency=1	new_cov=0/2	quality=0.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	715		REL606	522180	0	A	G	frequency=1	new_cov=11/14	quality=79.2	ref_cov=0/0	tot_cov=11/14
RA	716		REL606	545344	0	C	T	frequency=1	new_cov=6/9	quality=26.1	ref_cov=0/0	tot_cov=6/9
RA	718		REL606	549004	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	721		REL606	550485	1	.	G	frequency=1	new_cov=3/2	quality=4.0	ref_cov=0/1	tot_cov=3/3
RA	722		REL606	553093	0	C	T	frequency=1	new_cov=19/12	quality=82.8	ref_cov=0/0	tot_cov=19/13
RA	729		REL606	555681	0	A	G	frequency=1	new_cov=22/8	quality=9.0	ref_cov=18/6	tot_cov=40/14
RA	741		REL606	565276	0	C	T	frequency=1	new_cov=5/11	quality=38.5	ref_cov=0/0	tot_cov=5/11
RA	754		REL606	572356	0	T	C	frequency=1	new_cov=0/1	quality=-3.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	755		REL606	572360	1	.	C	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	758		REL606	572820	0	A	.	frequency=1	new_cov=0/1	quality=-1.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	762		REL606	573426	1	.	C	frequency=1	new_cov=0/1	quality=-3.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	766		REL606	582507	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-3.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	767		REL606	582509	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	768		REL606	582516	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	769		REL606	583516	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-3.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	770		REL606	583518	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-4.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	776		REL606	592510	0	T	C	frequency=1	new_cov=11/6	quality=47.9	ref_cov=0/0	tot_cov=11/6
RA	777		REL606	605580	0	A	G	frequency=1	new_cov=4/8	quality=33.9	ref_cov=0/0	tot_cov=5/8
RA	778		REL606	609346	0	C	T	frequency=1	new_cov=12/9	quality=50.6	ref_cov=0/1	tot_cov=12/10
RA	779		REL606	609892	0	G	.	frequency=1	new_cov=6/11	quality=80.2	ref_cov=0/0	tot_cov=6/11
RA	780		REL606	613169	0	C	T	frequency=1	new_cov=13/21	quality=85.4	ref_cov=0/0	tot_cov=13/21
RA	784		REL606	627610	0	G	A	frequency=1	new_cov=47/43	quality=164.1	ref_cov=10/18	tot_cov=57/61
RA	786		REL606	636299	1	.	G	frequency=1	new_cov=11/7	quality=50.2	ref_cov=0/0	tot_cov=11/7
RA	787		REL606	648692	0	C	T	frequency=1	new_cov=11/13	quality=59.9	ref_cov=0/0	tot_cov=11/13
RA	788		REL606	662118	0	C	T	frequency=1	new_cov=13/7	quality=52.1	ref_cov=0/1	tot_cov=13/8
RA	789		REL606	664688	0	T	.	frequency=1	new_cov=9/13	quality=102.4	ref_cov=1/0	tot_cov=10/13
RA	791		REL606	670500	0	C	T	frequency=1	new_cov=10/10	quality=48.8	ref_cov=0/0	tot_cov=10/10
RA	797		REL606	679005	0	A	C	frequency=1	new_cov=0/1	quality=-4.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	800		REL606	679238	1	.	T	frequency=1	new_cov=3/16	quality=38.4	ref_cov=0/2	tot_cov=3/18
RA	801		REL606	679395	0	C	T	frequency=1	new_cov=12/5	quality=37.0	ref_cov=0/4	tot_cov=12/9
RA	802		REL606	692880	0	A	G	frequency=1	new_cov=11/9	quality=54.9	ref_cov=1/0	tot_cov=12/9
RA	810		REL606	712766	0	A	C	frequency=1	new_cov=0/1	quality=-6.5	ref_cov=0/1	reject=EVALUE	tot_cov=0/2
RA	811		REL606	712768	0	T	G	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/1	reject=EVALUE	tot_cov=0/2
RA	815		REL606	713566	0	C	T	frequency=1	new_cov=5/6	quality=26.2	ref_cov=0/0	tot_cov=5/6
RA	838		REL606	723042	0	C	T	frequency=1	new_cov=11/11	quality=59.5	ref_cov=0/0	tot_cov=11/11
RA	839		REL606	723449	0	T	C	frequency=1	new_cov=8/10	quality=54.3	ref_cov=0/0	tot_cov=8/10
RA	840		REL606	731936	0	A	G	frequency=1	new_cov=19/7	quality=73.2	ref_cov=0/0	tot_cov=19/7
RA	841		REL606	734488	0	C	T	frequency=1	new_cov=17/15	quality=87.0	ref_cov=0/0	tot_cov=17/15
RA	842		REL606	734890	0	C	T	frequency=1	new_cov=13/17	quality=64.2	ref_cov=1/0	tot_cov=15/19
RA	844		REL606	754682	0	C	T	frequency=1	new_cov=18/20	quality=96.3	ref_cov=2/0	tot_cov=20/21
RA	853		REL606	765234	0	A	G	frequency=1	new_cov=5/22	quality=86.4	ref_cov=0/0	tot_cov=5/22
RA	854		REL606	767233	0	C	T	frequency=1	new_cov=10/13	quality=62.5	ref_cov=0/0	tot_cov=10/13
RA	855		REL606	767369	0	C	T	frequency=1	new_cov=11/14	quality=65.6	ref_cov=0/0	tot_cov=11/14
RA	856		REL606	771216	0	A	G	frequency=1	new_cov=7/11	quality=50.8	ref_cov=0/0	tot_cov=7/11
RA	857		REL606	776222	0	A	G	frequency=1	new_cov=13/15	quality=87.1	ref_cov=0/0	tot_cov=13/15
RA	859		REL606	784168	0	A	G	frequency=1	new_cov=11/7	quality=55.3	ref_cov=0/0	tot_cov=11/7
RA	860		REL606	793309	0	A	G	frequency=1	new_cov=7/23	quality=96.0	ref_cov=0/0	tot_cov=7/23
RA	861		REL606	794720	1	.	G	frequency=1	new_cov=1/7	quality=19.4	ref_cov=0/0	tot_cov=1/7
RA	863		REL606	804446	0	C	T	frequency=1	new_cov=18/16	quality=87.5	ref_cov=0/1	tot_cov=18/18
RA	864		REL606	817276	0	C	T	frequency=1	new_cov=19/7	quality=75.6	ref_cov=0/0	tot_cov=19/7
RA	865		REL606	820839	0	G	.	frequency=1	new_cov=18/9	quality=118.8	ref_cov=0/0	tot_cov=19/10
RA	866		REL606	821131	0	A	G	frequency=1	new_cov=11/24	quality=103.7	ref_cov=0/1	tot_cov=11/26
RA	867		REL606	828156	0	C	T	frequency=1	new_cov=13/9	quality=45.6	ref_cov=1/0	tot_cov=14/10
RA	868		REL606	845650	0	G	A	frequency=1	new_cov=13/13	quality=72.0	ref_cov=0/0	tot_cov=13/13
RA	871		REL606	886370	0	A	G	frequency=1	new_cov=11/17	quality=88.3	ref_cov=0/0	tot_cov=11/17
RA	874		REL606	894198	0	C	T	frequency=1	new_cov=9/17	quality=71.8	ref_cov=0/0	tot_cov=9/17
RA	875		REL606	901828	1	.	G	frequency=1	new_cov=5/3	quality=16.6	ref_cov=0/0	tot_cov=5/3
RA	876		REL606	904606	0	C	T	frequency=1	new_cov=7/13	quality=31.0	ref_cov=0/0	tot_cov=7/16
RA	877		REL606	925905	0	C	T	frequency=1	new_cov=8/11	quality=46.2	ref_cov=0/0	tot_cov=8/11
RA	878		REL606	931817	0	A	T	frequency=1	new_cov=0/1	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	879		REL606	931822	0	A	C	frequency=1	new_cov=0/1	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	880		REL606	931828	0	C	.	frequency=1	new_cov=0/1	quality=-2.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	886		REL606	943475	0	C	T	frequency=1	new_cov=8/16	quality=67.1	ref_cov=0/0	tot_cov=8/16
RA	887		REL606	946011	0	A	G	frequency=1	new_cov=10/18	quality=88.6	ref_cov=0/0	tot_cov=10/18
RA	888		REL606	967184	0	G	A	frequency=1	new_cov=5/3	quality=17.6	ref_cov=0/0	tot_cov=5/3
RA	890		REL606	1001295	0	A	G	frequency=1	new_cov=6/11	quality=52.6	ref_cov=0/0	tot_cov=6/11
RA	891		REL606	1003885	0	G	A	frequency=1	new_cov=15/13	quality=81.5	ref_cov=0/0	tot_cov=15/13
RA	892		REL606	1012717	0	C	T	frequency=1	new_cov=9/8	quality=43.9	ref_cov=0/0	tot_cov=9/9
RA	893		REL606	1019315	0	G	.	frequency=1	new_cov=10/9	quality=82.9	ref_cov=0/1	tot_cov=10/10
RA	895		REL606	1037343	0	A	.	frequency=1	new_cov=14/5	quality=90.7	ref_cov=0/0	tot_cov=14/5
RA	897		REL606	1082646	0	A	G	frequency=1	new_cov=16/8	quality=73.1	ref_cov=0/0	tot_cov=16/8
RA	898		REL606	1085185	0	C	T	frequency=1	new_cov=7/15	quality=55.9	ref_cov=0/0	tot_cov=7/15
RA	899		REL606	1088797	0	T	C	frequency=1	new_cov=5/7	quality=32.1	ref_cov=0/0	tot_cov=5/7
RA	900		REL606	1110583	1	.	A	frequency=1	new_cov=0/2	quality=-1.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	901		REL606	1110595	0	T	G	frequency=1	new_cov=0/1	quality=-4.9	ref_cov=0/1	reject=EVALUE	tot_cov=0/2
RA	906		REL606	1111978	0	T	G	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	910		REL606	1113198	0	A	G	frequency=1	new_cov=8/6	quality=41.5	ref_cov=0/0	tot_cov=8/6
RA	911		REL606	1114535	0	C	T	frequency=1	new_cov=13/18	quality=79.8	ref_cov=0/0	tot_cov=13/18
RA	912		REL606	1115003	0	C	G	frequency=1	new_cov=17/16	quality=104.8	ref_cov=0/0	tot_cov=17/16
RA	913		REL606	1115970	0	G	A	frequency=1	new_cov=10/11	quality=55.3	ref_cov=0/1	tot_cov=10/12
RA	914		REL606	1129572	0	C	T	frequency=1	new_cov=6/11	quality=22.1	ref_cov=0/2	tot_cov=6/13
RA	915		REL606	1147840	0	C	T	frequency=1	new_cov=9/7	quality=42.8	ref_cov=0/0	tot_cov=9/7
RA	916		REL606	1148998	0	A	G	frequency=1	new_cov=11/19	quality=90.5	ref_cov=0/0	tot_cov=11/19
RA	917		REL606	1149407	0	A	G	frequency=1	new_cov=9/12	quality=62.9	ref_cov=1/0	tot_cov=10/12
RA	918		REL606	1166061	1	.	G	frequency=1	new_cov=3/4	quality=9.2	ref_cov=1/0	tot_cov=4/4
RA	919		REL606	1172383	1	.	C	frequency=1	new_cov=7/1	quality=12.8	ref_cov=0/0	tot_cov=7/1
RA	920		REL606	1177550	0	C	T	frequency=1	new_cov=7/14	quality=46.4	ref_cov=0/1	tot_cov=7/16
RA	925		REL606	1186699	0	C	T	frequency=1	new_cov=10/13	quality=60.4	ref_cov=0/0	tot_cov=10/13
RA	929		REL606	1208180	0	G	A	frequency=1	new_cov=17/11	quality=79.6	ref_cov=0/0	tot_cov=17/11
RA	930		REL606	1212335	0	A	G	frequency=1	new_cov=11/2	quality=35.5	ref_cov=0/0	tot_cov=11/2
RA	931		REL606	1218314	0	A	G	frequency=1	new_cov=10/14	quality=73.5	ref_cov=0/0	tot_cov=10/14
RA	934		REL606	1256288	1	.	C	frequency=1	new_cov=7/9	quality=45.2	ref_cov=0/0	tot_cov=7/9
RA	935		REL606	1259582	0	C	T	frequency=1	new_cov=15/15	quality=80.4	ref_cov=0/0	tot_cov=15/15
RA	946		REL606	1276386	0	T	C	frequency=1	new_cov=15/8	quality=73.6	ref_cov=0/0	tot_cov=15/8
RA	957		REL606	1331794	0	C	A	frequency=1	new_cov=17/19	quality=103.6	ref_cov=0/0	tot_cov=17/19
RA	958		REL606	1339424	0	A	G	frequency=1	new_cov=6/8	quality=41.9	ref_cov=0/0	tot_cov=6/8
RA	959		REL606	1357824	0	C	T	frequency=1	new_cov=17/12	quality=74.4	ref_cov=0/0	tot_cov=17/12
RA	960		REL606	1361067	0	T	C	frequency=1	new_cov=9/6	quality=38.9	ref_cov=1/0	tot_cov=10/6
RA	961		REL606	1364103	0	C	T	frequency=1	new_cov=7/14	quality=45.9	ref_cov=0/0	tot_cov=7/15
RA	962		REL606	1364638	0	C	T	frequency=1	new_cov=8/19	quality=69.5	ref_cov=0/0	tot_cov=8/19
RA	963		REL606	1396262	0	A	G	frequency=1	new_cov=11/14	quality=71.9	ref_cov=0/0	tot_cov=11/14
RA	964		REL606	1407377	0	C	T	frequency=1	new_cov=16/11	quality=71.6	ref_cov=0/1	tot_cov=16/12
RA	965		REL606	1415611	0	A	.	frequency=1	new_cov=12/7	quality=92.8	ref_cov=0/0	tot_cov=12/7
RA	971		REL606	1420108	0	T	.	frequency=1	new_cov=8/6	quality=59.8	ref_cov=0/0	tot_cov=8/6
RA	974		REL606	1424451	0	A	G	deleted=1	frequency=1	new_cov=1/0	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	975		REL606	1424460	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-3.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	976		REL606	1424462	0	A	G	deleted=1	frequency=1	new_cov=1/0	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	977		REL606	1426028	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	978		REL606	1426030	0	A	T	deleted=1	frequency=1	new_cov=0/1	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	979		REL606	1426348	0	T	C	deleted=1	frequency=1	new_cov=0/2	quality=-0.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	980		REL606	1426350	0	G	T	deleted=1	frequency=1	new_cov=0/2	quality=-1.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	984		REL606	1428837	0	T	.	frequency=1	new_cov=8/6	quality=58.6	ref_cov=1/0	tot_cov=9/6
RA	985		REL606	1439581	1	.	G	frequency=1	new_cov=3/12	quality=24.0	ref_cov=3/1	tot_cov=6/13
RA	986		REL606	1440085	0	A	G	frequency=1	new_cov=16/12	quality=86.2	ref_cov=0/0	tot_cov=16/12
RA	987		REL606	1440538	0	A	G	frequency=1	new_cov=19/15	quality=100.5	ref_cov=0/1	tot_cov=19/16
RA	989		REL606	1450502	0	C	T	frequency=1	new_cov=11/8	quality=50.1	ref_cov=0/0	tot_cov=11/9
RA	992		REL606	1451965	0	A	G	frequency=1	new_cov=7/7	quality=11.7	ref_cov=7/2	tot_cov=14/9
RA	993		REL606	1451966	0	G	C	frequency=1	new_cov=7/7	quality=4.6	ref_cov=7/2	tot_cov=14/9
RA	994		REL606	1451967	0	C	G	frequency=1	new_cov=7/8	quality=10.0	ref_cov=7/2	tot_cov=14/10
RA	995		REL606	1451968	0	G	C	frequency=1	new_cov=7/8	quality=9.1	ref_cov=7/2	tot_cov=14/10
RA	996		REL606	1451970	0	C	A	frequency=1	new_cov=8/8	quality=18.5	ref_cov=5/2	tot_cov=13/10
RA	997		REL606	1451971	0	A	G	frequency=1	new_cov=8/8	quality=27.7	ref_cov=4/2	tot_cov=12/10
RA	998		REL606	1451972	1	.	A	frequency=1	new_cov=0/8	quality=7.6	ref_cov=0/2	tot_cov=0/10
RA	999		REL606	1452377	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1000		REL606	1452385	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1001		REL606	1454516	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1002		REL606	1456731	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1003		REL606	1458536	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1004		REL606	1459523	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1005		REL606	1459537	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1006		REL606	1461329	0	A	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1012		REL606	1465314	0	G	A	frequency=1	new_cov=11/8	quality=44.2	ref_cov=1/0	tot_cov=12/8
RA	1013		REL606	1470498	0	T	.	frequency=1	new_cov=12/14	quality=124.4	ref_cov=0/0	tot_cov=12/14
RA	1014		REL606	1472605	0	C	T	frequency=1	new_cov=13/19	quality=78.7	ref_cov=0/1	tot_cov=13/20
RA	1021		REL606	1499186	1	.	C	frequency=1	new_cov=0/1	quality=-3.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1030		REL606	1511178	0	C	T	frequency=1	new_cov=18/11	quality=76.2	ref_cov=0/0	tot_cov=18/12
RA	1031		REL606	1520967	0	G	A	frequency=1	new_cov=10/10	quality=47.7	ref_cov=0/0	tot_cov=11/10
RA	1032		REL606	1522006	0	C	T	frequency=1	new_cov=17/15	quality=81.3	ref_cov=1/1	tot_cov=18/16
RA	1034		REL606	1533135	0	A	G	frequency=1	new_cov=11/17	quality=82.8	ref_cov=0/0	tot_cov=11/17
RA	1041		REL606	1583771	0	T	C	frequency=1	new_cov=11/9	quality=61.5	ref_cov=0/0	tot_cov=11/9
RA	1042		REL606	1587505	0	C	T	frequency=1	new_cov=11/8	quality=50.3	ref_cov=0/0	tot_cov=11/8
RA	1043		REL606	1591928	0	G	A	frequency=1	new_cov=10/9	quality=47.8	ref_cov=0/0	tot_cov=10/9
RA	1066		REL606	1604898	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-4.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	1067		REL606	1604908	0	A	C	deleted=1	frequency=1	new_cov=1/1	quality=-2.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	1071		REL606	1604991	0	A	C	deleted=1	frequency=1	new_cov=1/1	quality=-0.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/1
RA	1072		REL606	1605001	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1073		REL606	1605334	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-3.7	ref_cov=1/0	reject=EVALUE	tot_cov=1/1
RA	1075		REL606	1605346	0	A	G	deleted=1	frequency=1	new_cov=1/4	quality=11.3	ref_cov=0/0	tot_cov=1/4
RA	1083		REL606	1618094	1	.	C	frequency=1	new_cov=4/6	quality=13.5	ref_cov=0/2	tot_cov=4/8
RA	1088		REL606	1626202	0	G	A	frequency=1	new_cov=15/11	quality=65.4	ref_cov=0/0	tot_cov=16/11
RA	1089		REL606	1640944	0	G	A	frequency=1	new_cov=7/14	quality=52.2	ref_cov=0/0	tot_cov=8/14
RA	1093		REL606	1691520	0	T	.	frequency=1	new_cov=2/3	quality=18.7	ref_cov=0/0	tot_cov=2/3
RA	1094		REL606	1700108	0	G	A	frequency=1	new_cov=13/15	quality=64.5	ref_cov=1/0	tot_cov=14/15
RA	1097		REL606	1722440	0	T	C	frequency=1	new_cov=14/21	quality=109.0	ref_cov=0/0	tot_cov=14/21
RA	1098		REL606	1729347	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1099		REL606	1729923	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-3.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1102		REL606	1733343	0	G	A	frequency=1	new_cov=15/18	quality=90.4	ref_cov=0/0	tot_cov=15/18
RA	1104		REL606	1750149	0	C	T	frequency=1	new_cov=12/7	quality=35.4	ref_cov=0/0	tot_cov=12/8
RA	1105		REL606	1795815	0	C	.	frequency=1	new_cov=3/7	quality=45.9	ref_cov=0/0	tot_cov=3/7
RA	1106		REL606	1801738	0	G	A	frequency=1	new_cov=15/11	quality=64.1	ref_cov=0/0	tot_cov=16/11
RA	1108		REL606	1803534	0	G	A	frequency=1	new_cov=18/17	quality=93.4	ref_cov=0/0	tot_cov=18/18
RA	1109		REL606	1823483	0	A	G	frequency=1	new_cov=10/11	quality=65.2	ref_cov=0/0	tot_cov=10/11
RA	1110		REL606	1825303	0	T	C	frequency=1	new_cov=12/20	quality=103.3	ref_cov=0/0	tot_cov=12/20
RA	1111		REL606	1829964	0	G	A	frequency=1	new_cov=17/14	quality=88.4	ref_cov=0/0	tot_cov=18/14
RA	1112		REL606	1849061	1	.	G	frequency=1	new_cov=10/3	quality=33.1	ref_cov=0/1	tot_cov=10/4
RA	1117		REL606	1882713	0	G	A	frequency=1	new_cov=14/14	quality=56.2	ref_cov=0/0	tot_cov=15/14
RA	1118		REL606	1886035	0	T	C	frequency=1	new_cov=6/5	quality=29.8	ref_cov=0/0	tot_cov=6/5
RA	1119		REL606	1902731	0	A	G	frequency=1	new_cov=7/14	quality=64.5	ref_cov=0/0	tot_cov=7/14
RA	1120		REL606	1921128	0	G	A	frequency=1	new_cov=8/10	quality=46.4	ref_cov=0/1	tot_cov=8/11
RA	1121		REL606	1935390	0	G	A	frequency=1	new_cov=17/9	quality=71.3	ref_cov=0/0	tot_cov=17/9
RA	1122		REL606	1966467	0	T	C	frequency=1	new_cov=9/16	quality=73.7	ref_cov=0/0	tot_cov=9/16
RA	1129		REL606	1983855	0	T	C	frequency=1	new_cov=11/13	quality=71.0	ref_cov=0/0	tot_cov=11/13
RA	1136		REL606	2007567	0	C	.	frequency=1	new_cov=13/12	quality=114.6	ref_cov=0/1	tot_cov=13/13
RA	1137		REL606	2007865	0	T	C	frequency=1	new_cov=9/14	quality=57.1	ref_cov=1/0	tot_cov=10/14
RA	1138		REL606	2012737	0	T	C	frequency=1	new_cov=23/12	quality=107.6	ref_cov=0/0	tot_cov=23/12
RA	1139		REL606	2017730	1	.	G	frequency=1	new_cov=1/4	quality=10.5	ref_cov=0/0	tot_cov=1/4
RA	1146		REL606	2032347	0	C	T	frequency=1	new_cov=8/3	quality=25.6	ref_cov=0/0	tot_cov=8/3
RA	1149		REL606	2054912	0	C	G	deleted=1	frequency=1	new_cov=1/0	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1150		REL606	2054917	0	C	G	deleted=1	frequency=1	new_cov=1/0	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1157		REL606	2087418	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1158		REL606	2089008	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1159		REL606	2089645	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1160		REL606	2090219	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-3.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1161		REL606	2090225	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-4.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1162		REL606	2096463	0	T	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1163		REL606	2097038	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1164		REL606	2097108	0	G	C	deleted=1	frequency=1	new_cov=0/1	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1165		REL606	2097109	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1166		REL606	2097113	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1167		REL606	2104667	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1168		REL606	2111701	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1169		REL606	2121889	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1173		REL606	2130799	0	A	G	frequency=1	new_cov=8/7	quality=44.9	ref_cov=0/0	tot_cov=8/7
RA	1175		REL606	2162780	0	T	C	frequency=1	new_cov=13/6	quality=57.6	ref_cov=0/0	tot_cov=13/6
RA	1177		REL606	2166182	0	G	A	frequency=1	new_cov=16/9	quality=53.5	ref_cov=0/1	tot_cov=17/10
RA	1178		REL606	2167011	0	T	C	frequency=1	new_cov=16/13	quality=85.2	ref_cov=0/0	tot_cov=16/13
RA	1183		REL606	2190393	1	.	C	frequency=1	new_cov=8/7	quality=34.8	ref_cov=0/0	tot_cov=8/7
RA	1185		REL606	2197386	0	C	T	frequency=1	new_cov=7/7	quality=26.7	ref_cov=0/2	tot_cov=7/9
RA	1186		REL606	2198299	0	A	G	frequency=1	new_cov=12/12	quality=76.3	ref_cov=0/0	tot_cov=12/12
RA	1187		REL606	2200070	0	G	A	frequency=1	new_cov=12/13	quality=66.1	ref_cov=0/0	tot_cov=12/13
RA	1188		REL606	2216447	0	C	T	frequency=1	new_cov=13/6	quality=44.9	ref_cov=0/0	tot_cov=14/6
RA	1189		REL606	2226502	0	T	C	frequency=1	new_cov=10/4	quality=35.6	ref_cov=0/1	tot_cov=10/5
RA	1191		REL606	2236153	0	G	A	frequency=1	new_cov=14/15	quality=69.3	ref_cov=0/0	tot_cov=14/16
RA	1192		REL606	2239749	1	.	C	frequency=1	new_cov=4/5	quality=17.3	ref_cov=0/0	tot_cov=4/5
RA	1193		REL606	2244525	0	G	A	frequency=1	new_cov=9/0	quality=15.1	ref_cov=0/0	tot_cov=10/0
RA	1194		REL606	2247103	1	.	C	frequency=1	new_cov=17/4	quality=57.2	ref_cov=0/0	tot_cov=17/4
RA	1198		REL606	2265986	0	G	A	frequency=1	new_cov=7/12	quality=50.0	ref_cov=0/0	tot_cov=7/12
RA	1199		REL606	2271283	0	A	G	frequency=1	new_cov=15/21	quality=112.7	ref_cov=0/0	tot_cov=15/21
RA	1200		REL606	2277269	0	C	T	frequency=1	new_cov=10/5	quality=30.2	ref_cov=1/1	tot_cov=11/6
RA	1202		REL606	2283856	0	A	G	frequency=1	new_cov=18/12	quality=86.3	ref_cov=1/0	tot_cov=19/12
RA	1203		REL606	2293568	0	G	A	frequency=1	new_cov=13/12	quality=66.9	ref_cov=0/0	tot_cov=13/12
RA	1204		REL606	2301407	0	C	T	frequency=1	new_cov=13/8	quality=58.1	ref_cov=0/0	tot_cov=13/8
RA	1207		REL606	2317419	0	T	C	frequency=1	new_cov=13/13	quality=79.2	ref_cov=0/0	tot_cov=13/13
RA	1208		REL606	2319260	0	G	A	frequency=1	new_cov=21/13	quality=78.5	ref_cov=1/0	tot_cov=22/13
RA	1209		REL606	2332083	1	.	A	frequency=1	new_cov=8/0	quality=9.5	ref_cov=0/2	tot_cov=8/2
RA	1210		REL606	2333539	1	.	T	frequency=1	new_cov=14/6	quality=49.6	ref_cov=0/0	tot_cov=14/6
RA	1211		REL606	2363952	0	G	A	frequency=1	new_cov=6/20	quality=70.4	ref_cov=0/0	tot_cov=6/20
RA	1212		REL606	2365779	0	G	A	frequency=1	new_cov=16/6	quality=59.1	ref_cov=0/0	tot_cov=16/6
RA	1213		REL606	2374708	0	G	A	frequency=1	new_cov=7/11	quality=46.6	ref_cov=1/0	tot_cov=8/11
RA	1214		REL606	2389878	0	G	T	frequency=1	new_cov=7/14	quality=55.8	ref_cov=0/0	tot_cov=7/14
RA	1215		REL606	2393070	0	A	G	frequency=1	new_cov=11/14	quality=74.5	ref_cov=0/0	tot_cov=11/14
RA	1218		REL606	2446984	0	A	C	frequency=1	new_cov=20/21	quality=133.9	ref_cov=0/0	tot_cov=20/21
RA	1219		REL606	2450378	0	G	A	frequency=1	new_cov=7/15	quality=48.0	ref_cov=0/1	tot_cov=7/16
RA	1229		REL606	2483043	0	G	A	frequency=1	new_cov=19/11	quality=62.2	ref_cov=1/2	tot_cov=21/13
RA	1235		REL606	2529651	0	C	T	frequency=1	new_cov=17/15	quality=75.7	ref_cov=0/0	tot_cov=17/15
RA	1237		REL606	2569859	0	A	G	frequency=1	new_cov=20/13	quality=102.3	ref_cov=0/0	tot_cov=20/13
RA	1238		REL606	2570083	0	G	A	frequency=1	new_cov=14/19	quality=90.6	ref_cov=0/0	tot_cov=14/19
RA	1243		REL606	2583071	0	G	A	frequency=1	new_cov=5/8	quality=27.5	ref_cov=0/1	tot_cov=5/9
RA	1247		REL606	2611313	0	T	.	frequency=1	new_cov=12/9	quality=102.8	ref_cov=0/0	tot_cov=12/9
RA	1248		REL606	2616302	1	.	G	frequency=1	new_cov=3/2	quality=2.7	ref_cov=0/0	tot_cov=3/2
RA	1249		REL606	2618057	0	G	T	frequency=1	new_cov=1/0	quality=-6.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1252		REL606	2628718	0	T	C	frequency=1	new_cov=16/7	quality=71.4	ref_cov=0/0	tot_cov=16/7
RA	1254		REL606	2636868	1	.	T	frequency=1	new_cov=4/3	quality=-0.3	ref_cov=0/2	reject=EVALUE	tot_cov=4/5
RA	1255		REL606	2639449	0	G	A	frequency=1	new_cov=5/11	quality=32.0	ref_cov=0/0	tot_cov=5/11
RA	1256		REL606	2646763	0	A	.	frequency=1	new_cov=10/7	quality=59.0	ref_cov=2/1	tot_cov=13/8
RA	1259		REL606	2650677	0	C	.	frequency=1	new_cov=1/0	quality=-1.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1265		REL606	2659827	0	T	C	frequency=1	new_cov=12/19	quality=90.6	ref_cov=0/0	tot_cov=12/19
RA	1267		REL606	2665639	0	A	T	frequency=1	new_cov=11/11	quality=58.9	ref_cov=0/0	tot_cov=11/11
RA	1271		REL606	2697224	0	T	C	frequency=1	new_cov=11/8	quality=55.0	ref_cov=0/0	tot_cov=11/8
RA	1272		REL606	2707154	0	T	C	frequency=1	new_cov=7/16	quality=65.5	ref_cov=1/0	tot_cov=8/16
RA	1282		REL606	2723462	0	A	G	frequency=1	new_cov=10/13	quality=68.9	ref_cov=0/0	tot_cov=10/13
RA	1283		REL606	2724782	0	T	C	frequency=1	new_cov=9/17	quality=82.0	ref_cov=0/0	tot_cov=9/17
RA	1284		REL606	2726501	0	T	C	frequency=1	new_cov=5/12	quality=44.9	ref_cov=0/1	tot_cov=5/13
RA	1285		REL606	2753451	0	G	A	frequency=1	new_cov=15/11	quality=69.4	ref_cov=0/0	tot_cov=15/11
RA	1286		REL606	2753768	0	C	T	frequency=1	new_cov=10/14	quality=57.6	ref_cov=0/0	tot_cov=10/14
RA	1287		REL606	2771282	0	G	A	frequency=1	new_cov=11/15	quality=74.6	ref_cov=0/0	tot_cov=11/15
RA	1291		REL606	2775819	0	T	.	frequency=1	new_cov=0/1	quality=-1.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1293		REL606	2780858	0	A	G	frequency=1	new_cov=2/11	quality=35.7	ref_cov=1/0	tot_cov=3/11
RA	1294		REL606	2789588	0	A	G	frequency=1	new_cov=9/8	quality=49.2	ref_cov=0/0	tot_cov=9/8
RA	1306		REL606	2843036	0	G	A	frequency=1	new_cov=14/10	quality=42.2	ref_cov=1/1	tot_cov=15/11
RA	1312		REL606	2906615	0	G	A	frequency=1	new_cov=9/4	quality=28.8	ref_cov=0/0	tot_cov=9/4
RA	1313		REL606	2935321	0	T	C	frequency=1	new_cov=6/11	quality=44.7	ref_cov=0/0	tot_cov=6/11
RA	1315		REL606	2977018	0	G	A	frequency=1	new_cov=9/12	quality=57.0	ref_cov=1/0	tot_cov=10/12
RA	1319		REL606	2999330	0	G	A	frequency=1	new_cov=19/12	quality=89.2	ref_cov=0/0	tot_cov=19/12
RA	1320		REL606	3003744	0	C	T	frequency=1	new_cov=8/8	quality=35.7	ref_cov=0/0	tot_cov=8/10
RA	1323		REL606	3016885	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1324		REL606	3030719	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1325		REL606	3032690	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1326		REL606	3032757	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1327		REL606	3033550	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1328		REL606	3035116	0	A	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1331		REL606	3037295	0	A	G	frequency=1	new_cov=21/14	quality=104.6	ref_cov=0/0	tot_cov=22/14
RA	1334		REL606	3052315	0	C	.	frequency=1	new_cov=1/3	quality=2.8	ref_cov=0/2	tot_cov=1/5
RA	1335		REL606	3052316	0	G	.	frequency=1	new_cov=2/3	quality=5.2	ref_cov=0/2	tot_cov=2/5
RA	1336		REL606	3054123	0	A	G	frequency=1	new_cov=8/16	quality=68.9	ref_cov=1/0	tot_cov=9/16
RA	1337		REL606	3061822	0	T	C	frequency=1	new_cov=11/7	quality=51.3	ref_cov=0/1	tot_cov=11/8
RA	1338		REL606	3061923	0	T	C	frequency=1	new_cov=14/7	quality=63.9	ref_cov=0/0	tot_cov=14/7
RA	1339		REL606	3063476	0	T	C	frequency=1	new_cov=12/7	quality=57.6	ref_cov=0/0	tot_cov=12/7
RA	1340		REL606	3072845	0	T	C	frequency=1	new_cov=11/11	quality=65.9	ref_cov=0/0	tot_cov=11/11
RA	1341		REL606	3077743	0	A	G	frequency=1	new_cov=11/20	quality=94.1	ref_cov=0/1	tot_cov=11/21
RA	1342		REL606	3080187	0	A	T	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1345		REL606	3088379	0	A	.	frequency=1	new_cov=2/10	quality=53.1	ref_cov=0/0	tot_cov=2/10
RA	1347		REL606	3105821	0	G	A	frequency=1	new_cov=12/15	quality=65.1	ref_cov=0/1	tot_cov=12/16
RA	1348		REL606	3117097	0	G	A	frequency=1	new_cov=16/12	quality=66.8	ref_cov=0/1	tot_cov=16/14
RA	1349		REL606	3117473	0	T	A	frequency=1	new_cov=11/11	quality=56.6	ref_cov=0/0	tot_cov=11/11
RA	1350		REL606	3117629	0	T	C	frequency=1	new_cov=11/10	quality=59.7	ref_cov=0/0	tot_cov=11/10
RA	1352		REL606	3127663	0	C	T	frequency=1	new_cov=8/15	quality=58.8	ref_cov=0/0	tot_cov=8/15
RA	1353		REL606	3130508	0	G	A	frequency=1	new_cov=23/14	quality=102.1	ref_cov=0/0	tot_cov=23/14
RA	1354		REL606	3135301	0	T	C	frequency=1	new_cov=12/12	quality=74.8	ref_cov=0/0	tot_cov=12/12
RA	1355		REL606	3153996	0	T	C	frequency=1	new_cov=8/12	quality=60.5	ref_cov=0/0	tot_cov=8/12
RA	1356		REL606	3167907	0	C	T	frequency=1	new_cov=15/2	quality=38.4	ref_cov=0/0	tot_cov=15/3
RA	1357		REL606	3179094	0	T	C	frequency=1	new_cov=9/6	quality=41.3	ref_cov=1/0	tot_cov=10/6
RA	1360		REL606	3197461	0	A	G	frequency=1	new_cov=14/11	quality=73.4	ref_cov=0/0	tot_cov=15/11
RA	1361		REL606	3213814	1	.	G	frequency=1	new_cov=7/8	quality=40.1	ref_cov=0/0	tot_cov=7/8
RA	1362		REL606	3238724	0	C	T	frequency=1	new_cov=11/11	quality=58.2	ref_cov=1/0	tot_cov=12/11
RA	1363		REL606	3240003	0	T	C	frequency=1	new_cov=11/15	quality=78.6	ref_cov=0/0	tot_cov=11/15
RA	1364		REL606	3241496	0	C	T	frequency=1	new_cov=18/27	quality=117.7	ref_cov=0/0	tot_cov=18/27
RA	1365		REL606	3244240	1	.	C	frequency=1	new_cov=5/7	quality=32.5	ref_cov=0/0	tot_cov=5/7
RA	1366		REL606	3248434	0	A	.	frequency=1	new_cov=9/5	quality=65.8	ref_cov=0/0	tot_cov=9/5
RA	1369		REL606	3259432	0	A	G	frequency=1	new_cov=13/7	quality=55.2	ref_cov=0/0	tot_cov=13/7
RA	1373		REL606	3285419	1	.	C	frequency=1	new_cov=1/2	quality=3.4	ref_cov=0/0	tot_cov=1/2
RA	1374		REL606	3288025	0	T	A	frequency=1	new_cov=18/11	quality=79.5	ref_cov=0/0	tot_cov=18/11
RA	1378		REL606	3322942	0	T	C	frequency=1	new_cov=12/11	quality=73.5	ref_cov=0/0	tot_cov=12/11
RA	1379		REL606	3339313	0	A	C	frequency=1	new_cov=21/14	quality=112.8	ref_cov=0/0	tot_cov=21/14
RA	1380		REL606	3345160	0	A	G	frequency=1	new_cov=11/7	quality=55.3	ref_cov=0/0	tot_cov=11/7
RA	1387		REL606	3351577	0	A	G	frequency=1	new_cov=1/6	quality=18.6	ref_cov=0/0	tot_cov=1/6
RA	1391		REL606	3358865	0	G	A	frequency=1	new_cov=19/10	quality=79.9	ref_cov=0/0	tot_cov=19/10
RA	1392		REL606	3360899	1	.	C	frequency=1	new_cov=8/2	quality=23.3	ref_cov=0/1	tot_cov=8/3
RA	1393		REL606	3360899	2	.	C	frequency=1	new_cov=8/2	quality=17.2	ref_cov=0/1	tot_cov=8/3
RA	1394		REL606	3373583	0	C	T	frequency=1	new_cov=21/11	quality=89.2	ref_cov=0/1	tot_cov=21/12
RA	1400		REL606	3399407	0	A	G	frequency=1	new_cov=22/14	quality=112.4	ref_cov=0/0	tot_cov=23/14
RA	1401		REL606	3401754	0	C	A	frequency=1	new_cov=8/7	quality=38.0	ref_cov=1/0	tot_cov=9/7
RA	1407		REL606	3445742	0	G	A	frequency=1	new_cov=14/8	quality=54.5	ref_cov=0/0	tot_cov=15/9
RA	1408		REL606	3461642	0	G	A	frequency=1	new_cov=12/17	quality=76.9	ref_cov=0/0	tot_cov=12/17
RA	1409		REL606	3463900	0	C	T	frequency=1	new_cov=12/11	quality=55.3	ref_cov=0/0	tot_cov=12/12
RA	1412		REL606	3481820	0	A	G	frequency=1	new_cov=13/16	quality=85.4	ref_cov=0/0	tot_cov=13/16
RA	1413		REL606	3488669	0	A	C	frequency=1	new_cov=10/15	quality=74.7	ref_cov=0/1	tot_cov=10/16
RA	1414		REL606	3489876	0	C	T	frequency=1	new_cov=12/9	quality=48.4	ref_cov=0/0	tot_cov=12/10
RA	1415		REL606	3499794	0	A	G	frequency=1	new_cov=9/12	quality=64.9	ref_cov=0/0	tot_cov=9/12
RA	1417		REL606	3536603	0	G	A	frequency=1	new_cov=43/32	quality=203.5	ref_cov=0/2	tot_cov=44/34
RA	1418		REL606	3552440	0	A	C	deleted=1	frequency=1	new_cov=0/1	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1440		REL606	3573640	0	G	A	frequency=1	new_cov=26/32	quality=154.7	ref_cov=0/0	tot_cov=26/32
RA	1449		REL606	3612959	0	C	T	frequency=1	new_cov=15/25	quality=114.3	ref_cov=0/0	tot_cov=15/25
RA	1450		REL606	3616490	0	C	T	frequency=1	new_cov=16/16	quality=16.4	ref_cov=8/11	tot_cov=24/28
RA	1465		REL606	3635762	0	T	C	frequency=1	new_cov=7/13	quality=51.8	ref_cov=0/0	tot_cov=7/13
RA	1471		REL606	3686883	0	A	G	frequency=1	new_cov=8/12	quality=55.5	ref_cov=0/1	tot_cov=8/13
RA	1494		REL606	3744613	0	T	C	frequency=1	new_cov=0/5	quality=-5.9	ref_cov=2/0	reject=EVALUE	tot_cov=2/5
RA	1497		REL606	3754163	0	A	.	frequency=1	new_cov=6/5	quality=51.1	ref_cov=0/0	tot_cov=6/5
RA	1498		REL606	3758443	0	C	T	frequency=1	new_cov=11/14	quality=68.4	ref_cov=0/0	tot_cov=11/14
RA	1499		REL606	3763734	0	A	G	frequency=1	new_cov=6/16	quality=69.7	ref_cov=0/0	tot_cov=6/16
RA	1500		REL606	3793623	0	G	A	frequency=1	new_cov=14/10	quality=56.6	ref_cov=0/0	tot_cov=16/10
RA	1504		REL606	3822371	0	G	A	frequency=1	new_cov=13/14	quality=72.7	ref_cov=0/0	tot_cov=13/14
RA	1505		REL606	3837268	0	G	A	frequency=1	new_cov=11/9	quality=51.5	ref_cov=0/1	tot_cov=11/10
RA	1506		REL606	3862134	0	G	A	frequency=1	new_cov=12/7	quality=47.6	ref_cov=0/0	tot_cov=12/7
RA	1507		REL606	3864940	0	G	A	frequency=1	new_cov=15/11	quality=65.2	ref_cov=0/0	tot_cov=15/11
RA	1508		REL606	3867544	0	A	G	frequency=1	new_cov=13/17	quality=92.3	ref_cov=0/0	tot_cov=13/17
RA	1509		REL606	3869813	0	G	A	frequency=1	new_cov=21/10	quality=85.7	ref_cov=0/0	tot_cov=21/10
RA	1510		REL606	3872302	0	G	A	frequency=1	new_cov=14/18	quality=82.3	ref_cov=1/0	tot_cov=15/18
RA	1511		REL606	3874844	0	G	A	frequency=1	new_cov=8/16	quality=59.1	ref_cov=1/0	tot_cov=10/16
RA	1512		REL606	3883215	0	T	A	frequency=1	new_cov=0/6	quality=-2.4	ref_cov=1/0	reject=EVALUE	tot_cov=1/6
RA	1514		REL606	3892335	0	C	T	frequency=1	new_cov=10/9	quality=49.6	ref_cov=0/0	tot_cov=10/9
RA	1515		REL606	3893549	0	C	.	frequency=1	new_cov=10/7	quality=74.5	ref_cov=0/1	tot_cov=10/8
RA	1516		REL606	3893550	0	A	.	frequency=1	new_cov=10/8	quality=87.5	ref_cov=0/0	tot_cov=10/8
RA	1523		REL606	3909807	0	G	T	frequency=1	new_cov=9/9	quality=47.5	ref_cov=0/0	tot_cov=9/9
RA	1524		REL606	3911972	0	T	.	frequency=1	new_cov=6/5	quality=49.3	ref_cov=0/0	tot_cov=6/5
RA	1525		REL606	3917126	0	G	.	frequency=1	new_cov=3/5	quality=35.3	ref_cov=0/0	tot_cov=3/5
RA	1526		REL606	3917933	0	C	T	frequency=1	new_cov=6/17	quality=60.1	ref_cov=0/0	tot_cov=6/17
RA	1527		REL606	3920984	0	C	T	frequency=1	new_cov=13/19	quality=86.2	ref_cov=1/0	tot_cov=14/19
RA	1537		REL606	3999248	0	T	C	frequency=1	new_cov=6/6	quality=31.7	ref_cov=0/0	tot_cov=6/6
RA	1553		REL606	4023780	0	A	G	frequency=1	new_cov=16/11	quality=82.3	ref_cov=0/0	tot_cov=16/11
RA	1554		REL606	4046586	0	T	A	frequency=1	new_cov=16/15	quality=79.2	ref_cov=0/0	tot_cov=16/16
RA	1559		REL606	4100183	0	A	G	frequency=1	new_cov=15/13	quality=87.8	ref_cov=0/0	tot_cov=15/13
RA	1560		REL606	4107018	0	T	A	frequency=1	new_cov=11/13	quality=63.5	ref_cov=0/0	tot_cov=11/13
RA	1561		REL606	4110809	0	A	G	frequency=1	new_cov=15/14	quality=90.8	ref_cov=0/0	tot_cov=15/14
RA	1562		REL606	4110980	0	C	T	frequency=1	new_cov=11/11	quality=56.2	ref_cov=1/0	tot_cov=12/11
RA	1563		REL606	4142669	0	G	A	frequency=1	new_cov=15/23	quality=106.3	ref_cov=0/0	tot_cov=15/23
RA	1572		REL606	4154522	0	A	G	frequency=1	new_cov=14/10	quality=69.2	ref_cov=1/0	tot_cov=15/10
RA	1579		REL606	4163775	0	C	T	frequency=1	new_cov=22/15	quality=99.0	ref_cov=0/1	tot_cov=22/16
RA	1580		REL606	4165619	0	G	A	frequency=1	new_cov=18/15	quality=92.8	ref_cov=0/0	tot_cov=18/15
RA	1581		REL606	4180200	0	T	G	frequency=1	new_cov=10/11	quality=65.4	ref_cov=0/0	tot_cov=10/11
RA	1587		REL606	4196682	0	C	A	frequency=1	new_cov=22/13	quality=93.5	ref_cov=0/0	tot_cov=22/13
RA	1590		REL606	4201958	0	A	C	frequency=1	new_cov=15/14	quality=88.5	ref_cov=0/0	tot_cov=15/14
RA	1591		REL606	4207843	0	G	A	frequency=1	new_cov=15/17	quality=81.7	ref_cov=0/1	tot_cov=15/18
RA	1592		REL606	4212600	0	G	A	frequency=1	new_cov=10/10	quality=49.3	ref_cov=0/0	tot_cov=10/10
RA	1593		REL606	4214845	1	.	A	frequency=1	new_cov=4/6	quality=23.4	ref_cov=0/0	tot_cov=4/6
RA	1594		REL606	4225597	0	C	T	frequency=1	new_cov=11/13	quality=64.8	ref_cov=0/0	tot_cov=11/13
RA	1596		REL606	4266498	0	G	A	frequency=1	new_cov=19/8	quality=70.5	ref_cov=0/0	tot_cov=19/8
RA	1601		REL606	4285933	0	A	G	frequency=1	new_cov=13/16	quality=85.3	ref_cov=0/1	tot_cov=13/17
RA	1602		REL606	4289486	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1603		REL606	4289878	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1604		REL606	4289923	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-3.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1605		REL606	4291641	0	G	A	deleted=1	frequency=1	new_cov=0/1	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1608		REL606	4292885	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1609		REL606	4293126	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-4.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1610		REL606	4293136	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1611		REL606	4293140	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1612		REL606	4293524	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1613		REL606	4294074	0	T	A	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1614		REL606	4294197	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1615		REL606	4295535	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1616		REL606	4295543	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1617		REL606	4295613	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1618		REL606	4296815	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=1/0	reject=EVALUE	tot_cov=2/0
RA	1619		REL606	4296825	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1620		REL606	4298397	0	T	A	deleted=1	frequency=1	new_cov=0/1	quality=-4.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1621		REL606	4298401	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1622		REL606	4298407	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1623		REL606	4299885	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1624		REL606	4300282	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1625		REL606	4300934	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1626		REL606	4300938	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1632		REL606	4303498	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1633		REL606	4304268	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1634		REL606	4304516	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1635		REL606	4304519	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.2	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1638		REL606	4305063	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-3.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1639		REL606	4305070	0	A	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1640		REL606	4308336	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1641		REL606	4308345	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1642		REL606	4309159	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1643		REL606	4309163	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1644		REL606	4309164	0	G	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1645		REL606	4309167	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1646		REL606	4310224	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1647		REL606	4311676	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1648		REL606	4311678	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1649		REL606	4311683	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1650		REL606	4311732	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1651		REL606	4314777	0	T	C	deleted=1	frequency=1	new_cov=0/1	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1654		REL606	4317292	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.6	ref_cov=1/0	reject=EVALUE	tot_cov=2/0
RA	1655		REL606	4318100	0	A	G	deleted=1	frequency=1	new_cov=1/0	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1656		REL606	4319931	0	A	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1657		REL606	4319936	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1658		REL606	4319938	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1659		REL606	4319941	0	T	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1660		REL606	4321260	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1661		REL606	4321356	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1662		REL606	4321731	0	T	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1663		REL606	4322120	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1664		REL606	4323616	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1665		REL606	4323722	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1666		REL606	4324084	0	C	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1667		REL606	4325136	0	A	G	deleted=1	frequency=1	new_cov=1/0	quality=-4.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1668		REL606	4327753	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1671		REL606	4329836	0	T	C	deleted=1	frequency=1	new_cov=0/1	quality=-6.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1672		REL606	4330935	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1675		REL606	4331929	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1677		REL606	4332197	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1683		REL606	4347725	0	C	T	frequency=1	new_cov=10/9	quality=49.9	ref_cov=0/0	tot_cov=10/9
RA	1684		REL606	4349289	0	T	.	frequency=1	new_cov=4/6	quality=39.5	ref_cov=0/1	tot_cov=4/7
RA	1685		REL606	4363338	0	C	A	frequency=1	new_cov=14/11	quality=68.2	ref_cov=0/0	tot_cov=14/11
RA	1690		REL606	4378042	0	A	G	frequency=1	new_cov=12/24	quality=113.6	ref_cov=0/1	tot_cov=12/25
RA	1691		REL606	4380609	0	C	T	frequency=1	new_cov=17/15	quality=82.5	ref_cov=0/0	tot_cov=17/15
RA	1692		REL606	4382294	0	C	T	frequency=1	new_cov=24/14	quality=98.7	ref_cov=0/1	tot_cov=24/15
RA	1696		REL606	4397516	1	.	T	frequency=1	new_cov=7/6	quality=29.0	ref_cov=0/0	tot_cov=7/6
RA	1697		REL606	4406865	0	T	C	frequency=1	new_cov=10/9	quality=50.9	ref_cov=0/0	tot_cov=10/10
RA	1698		REL606	4420451	0	A	G	frequency=1	new_cov=13/14	quality=84.9	ref_cov=0/0	tot_cov=13/14
RA	1699		REL606	4431394	0	G	.	frequency=1	new_cov=9/20	quality=142.5	ref_cov=0/0	tot_cov=9/20
RA	1700		REL606	4431395	0	G	.	frequency=1	new_cov=9/19	quality=132.1	ref_cov=0/1	tot_cov=9/20
RA	1701		REL606	4433347	0	A	G	frequency=1	new_cov=19/11	quality=95.1	ref_cov=0/0	tot_cov=19/11
RA	1702		REL606	4435201	0	A	G	frequency=1	new_cov=17/8	quality=72.7	ref_cov=0/0	tot_cov=17/8
RA	1703		REL606	4439527	0	G	A	frequency=1	new_cov=22/17	quality=101.3	ref_cov=0/0	tot_cov=22/17
RA	1704		REL606	4471806	1	.	C	frequency=1	new_cov=11/4	quality=31.1	ref_cov=0/0	tot_cov=11/4
RA	1705		REL606	4472216	0	C	T	frequency=1	new_cov=14/13	quality=72.4	ref_cov=0/0	tot_cov=14/15
RA	1706		REL606	4475811	1	.	G	frequency=1	new_cov=7/0	quality=14.6	ref_cov=0/0	tot_cov=7/0
RA	1707		REL606	4485740	0	G	A	frequency=1	new_cov=10/6	quality=40.0	ref_cov=0/0	tot_cov=10/6
RA	1709		REL606	4491013	0	A	G	frequency=1	new_cov=8/23	quality=100.2	ref_cov=0/0	tot_cov=8/23
RA	1717		REL606	4510208	0	A	G	frequency=1	new_cov=12/13	quality=76.3	ref_cov=0/0	tot_cov=12/13
RA	1718		REL606	4522534	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1719		REL606	4526588	0	A	T	deleted=1	frequency=1	new_cov=2/0	quality=-4.5	ref_cov=0/0	reject=EVALUE	tot_cov=2/0
RA	1720		REL606	4526590	0	A	T	deleted=1	frequency=1	new_cov=2/0	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=2/0
RA	1721		REL606	4528162	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-4.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1722		REL606	4528166	0	G	A	deleted=1	frequency=1	new_cov=1/0	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1723		REL606	4531500	0	G	T	deleted=1	frequency=1	new_cov=1/0	quality=-6.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1724		REL606	4532899	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1725		REL606	4534689	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1726		REL606	4534693	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1727		REL606	4534699	0	G	T	deleted=1	frequency=1	new_cov=0/1	quality=-4.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1728		REL606	4534702	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1729		REL606	4535451	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1730		REL606	4535455	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1731		REL606	4535456	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1732		REL606	4540144	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1733		REL606	4540332	0	C	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1734		REL606	4543899	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1735		REL606	4545579	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1736		REL606	4546391	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1737		REL606	4547245	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1738		REL606	4547247	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	1739		REL606	4552361	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1740		REL606	4552601	0	C	T	deleted=1	frequency=1	new_cov=0/1	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1741		REL606	4555180	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1742		REL606	4557643	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1743		REL606	4557747	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	1746		REL606	4575416	0	A	G	frequency=1	new_cov=17/16	quality=104.1	ref_cov=0/0	tot_cov=17/16
RA	1747		REL606	4579259	0	C	T	frequency=1	new_cov=8/24	quality=85.5	ref_cov=1/0	tot_cov=9/25
RA	1748		REL606	4583729	0	T	C	frequency=1	new_cov=10/12	quality=69.9	ref_cov=0/0	tot_cov=10/12
RA	1749		REL606	4588672	0	A	G	frequency=1	new_cov=9/8	quality=44.8	ref_cov=1/0	tot_cov=10/8
RA	1750		REL606	4588888	0	C	T	frequency=1	new_cov=10/10	quality=50.1	ref_cov=0/0	tot_cov=10/10
RA	1751		REL606	4593186	0	G	A	frequency=1	new_cov=13/22	quality=101.2	ref_cov=0/0	tot_cov=14/22
RA	1756		REL606	4603391	0	C	T	frequency=1	new_cov=14/12	quality=47.9	ref_cov=0/1	tot_cov=14/13
RA	1761		REL606	4616538	0	A	C	frequency=1	new_cov=23/17	quality=132.3	ref_cov=0/0	tot_cov=23/17
RA	1762		REL606	4626007	1	.	C	frequency=1	new_cov=5/4	quality=22.3	ref_cov=0/0	tot_cov=5/4
RA	1763		REL606	4629225	0	C	T	frequency=1	new_cov=7/9	quality=38.0	ref_cov=0/0	tot_cov=7/9
MC	649		REL606	226559	228506	497	1448	left_inside_cov=6	left_outside_cov=7	right_inside_cov=6	right_outside_cov=7
MC	719		REL606	546952	550350	745	0	left_inside_cov=6	left_outside_cov=7	right_inside_cov=0	right_outside_cov=28
MC	772		REL606	581862	589525	0	1028	left_inside_cov=0	left_outside_cov=23	right_inside_cov=4	right_outside_cov=7
MC	943		REL606	1270057	1270666	85	215	left_inside_cov=3	left_outside_cov=7	right_inside_cov=6	right_outside_cov=8
MC	982		REL606	1424322	1426352	47	0	left_inside_cov=4	left_outside_cov=7	right_inside_cov=5	right_outside_cov=7
MC	1010		REL606	1451973	1462319	0	0	left_inside_cov=0	left_outside_cov=26	right_inside_cov=0	right_outside_cov=27
MC	1070		REL606	1604657	1604951	61	15	left_inside_cov=6	left_outside_cov=7	right_inside_cov=5	right_outside_cov=7
MC	1076		REL606	1604988	1605347	69	12	left_inside_cov=5	left_outside_cov=7	right_inside_cov=6	right_outside_cov=7
MC	1081		REL606	1606619	1616703	1296	8785	left_inside_cov=6	left_outside_cov=8	right_inside_cov=6	right_outside_cov=8
MC	1100		REL606	1729055	1731496	0	0	left_inside_cov=1	left_outside_cov=45	right_inside_cov=1	right_outside_cov=34
MC	1152		REL606	2032620	2055975	90	275	left_inside_cov=4	left_outside_cov=7	right_inside_cov=6	right_outside_cov=7
MC	1170		REL606	2086540	2122425	70	0	left_inside_cov=3	left_outside_cov=7	right_inside_cov=0	right_outside_cov=22
MC	1308		REL606	2877305	2877312	0	0	left_inside_cov=5	left_outside_cov=7	right_inside_cov=0	right_outside_cov=25
MC	1329		REL606	3015774	3035122	0	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=1	right_outside_cov=24
MC	1370		REL606	3260565	3260570	0	0	left_inside_cov=0	left_outside_cov=33	right_inside_cov=0	right_outside_cov=33
MC	1420		REL606	3549940	3553520	16	1082	left_inside_cov=5	left_outside_cov=7	right_inside_cov=6	right_outside_cov=7
MC	1492		REL606	3741219	3742142	749	0	left_inside_cov=5	left_outside_cov=8	right_inside_cov=0	right_outside_cov=20
MC	1517		REL606	3893569	3901456	1425	0	left_inside_cov=6	left_outside_cov=8	right_inside_cov=0	right_outside_cov=28
MC	1545		REL606	4017653	4017993	102	229	left_inside_cov=6	left_outside_cov=7	right_inside_cov=6	right_outside_cov=7
MC	1678		REL606	4289283	4333227	0	0	left_inside_cov=0	left_outside_cov=36	right_inside_cov=0	right_outside_cov=24
MC	1744		REL606	4521596	4561282	743	0	left_inside_cov=5	left_outside_cov=8	right_inside_cov=0	right_outside_cov=51
JC	63		REL606	1	1	REL606	4629812	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=7	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1__1__REL606__4629812__0__0____36__36__0__0	max_left=34	max_left_minus=30	max_left_plus=34	max_min_left=16	max_min_left_minus=16	max_min_left_plus=8	max_min_right=17	max_min_right_minus=10	max_min_right_plus=17	max_right=35	max_right_minus=33	max_right_plus=35	min_overlap_score=117	pos_hash_score=15	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	152		REL606	7190	1	REL606	1142248	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__7190__1__REL606__1142248__1__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=1	max_min_right_plus=16	max_right=16	max_right_minus=1	max_right_plus=16	min_overlap_score=17	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	5		REL606	15386	1	REL606	3517313	-1	0	alignment_overlap=3	coverage_minus=17	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__15386__1__REL606__3517316__0__3____36__36__1__0	max_left=30	max_left_minus=24	max_left_plus=30	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=342	pos_hash_score=30	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=35	total_reads=68
JC	29		REL606	15386	1	REL606	2448498	-1	0	alignment_overlap=4	coverage_minus=9	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__15385__1__REL606__2448501__0__4____36__36__1__0	max_left=31	max_left_minus=30	max_left_plus=31	max_min_left=11	max_min_left_minus=9	max_min_left_plus=11	max_min_right=15	max_min_right_minus=15	max_min_right_plus=14	max_right=29	max_right_minus=29	max_right_plus=29	min_overlap_score=151	pos_hash_score=17	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=20	total_reads=32
JC	3		REL606	16726	-1	REL606	3517306	1	0	alignment_overlap=1	coverage_minus=27	coverage_plus=34	flanking_left=36	flanking_right=36	key=REL606__16726__0__REL606__3517305__1__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=34	max_right_minus=31	max_right_plus=34	min_overlap_score=503	pos_hash_score=41	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=61	total_reads=73
JC	40		REL606	16728	-1	REL606	2448493	1	0	alignment_overlap=5	coverage_minus=9	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__16730__0__REL606__2448490__1__5____36__36__1__0	max_left=27	max_left_minus=27	max_left_plus=26	max_min_left=13	max_min_left_minus=13	max_min_left_plus=11	max_min_right=14	max_min_right_minus=13	max_min_right_plus=14	max_right=28	max_right_minus=20	max_right_plus=28	min_overlap_score=185	pos_hash_score=17	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=21	total_reads=28
JC	59		REL606	16990	1	REL606	3894996	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__16990__1__REL606__3894996__0__0____36__36__0__1	max_left=35	max_left_minus=29	max_left_plus=35	max_min_left=17	max_min_left_minus=17	max_min_left_plus=12	max_min_right=13	max_min_right_minus=12	max_min_right_plus=13	max_right=32	max_right_minus=25	max_right_plus=32	min_overlap_score=202	pos_hash_score=17	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=20	total_reads=20
JC	524		REL606	16991	1	REL606	3894997	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__16991__1__REL606__3894997__0__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=4	max_min_left=15	max_min_left_minus=15	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=26	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=4	total_reads=1
JC	33		REL606	16992	-1	REL606	588495	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__16992__0__REL606__588494__1__1____36__36__0__1	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=261	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=29	total_reads=30
JC	480		REL606	23700	1	REL606	1830039	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__23700__1__REL606__1830039__0__0____36__36__1__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	1		REL606	23729	-1	REL606	666128	-1	0	alignment_overlap=3	coverage_minus=17	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__23729__0__REL606__666131__0__3____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=31	max_min_left=11	max_min_left_minus=7	max_min_left_plus=11	max_min_right=15	max_min_right_minus=10	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=130	pos_hash_score=20	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=29	total_reads=121
JC	373		REL606	25703	-1	REL606	3511488	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__25703__0__REL606__3511488__1__-6__TAAATA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TAAATA
JC	402		REL606	25704	-1	REL606	3511486	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__25704__0__REL606__3511486__1__-3__AAA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AAA
JC	501		REL606	29613	1	REL606	3523976	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__29613__1__REL606__3523976__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	215		REL606	30555	-1	REL606	482513	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__30555__0__REL606__482513__0__-3__GTA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTA
JC	337		REL606	31685	1	REL606	2771826	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__31685__1__REL606__2771826__0__-1__A__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	471		REL606	32803	-1	REL606	2572947	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__32803__0__REL606__2572947__0__-3__GAC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GAC
JC	414		REL606	38961	1	REL606	3150329	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__38961__1__REL606__3150335__0__6____36__36__0__1	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	82		REL606	47905	-1	REL606	2849709	1	-2	alignment_overlap=-2	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__47905__0__REL606__2849709__1__-2__GG__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=58	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6	unique_read_sequence=GG
JC	125		REL606	52353	-1	REL606	1134244	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__52353__0__REL606__1134244__0__-4__CCGC__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=30	max_right_minus=15	max_right_plus=30	min_overlap_score=9	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=CCGC
JC	561		REL606	64843	-1	REL606	4433681	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__64843__0__REL606__4433681__0__-1__A__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	256		REL606	65588	-1	REL606	436644	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__65588__0__REL606__436644__1__-6__CATGAC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CATGAC
JC	457		REL606	69405	1	REL606	4569152	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__69405__1__REL606__4569152__1__0____36__36__1__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	242		REL606	69472	1	REL606	4304619	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__69476__1__REL606__4304619__1__4____36__36__1__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=4	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	274		REL606	69619	-1	REL606	218940	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__69619__0__REL606__218939__1__1____36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	388		REL606	69620	-1	REL606	349882	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__69620__0__REL606__349882__0__-5__TGCGC__36__36__0__1	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGCGC
JC	259		REL606	71567	1	REL606	1804989	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__71567__1__REL606__1804989__1__-2__CC__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CC
JC	184		REL606	76418	1	REL606	3899958	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__76418__1__REL606__3899959__0__1____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=33	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	464		REL606	77761	-1	REL606	2923881	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__77761__0__REL606__2923881__0__-6__CAATGG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAATGG
JC	243		REL606	78956	-1	REL606	4216037	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__78956__0__REL606__4216037__0__-6__TTGATG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTGATG
JC	421		REL606	84542	1	REL606	1136976	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__84542__1__REL606__1136976__0__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	450		REL606	84671	-1	REL606	1648832	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__84671__0__REL606__1648832__1__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	472		REL606	86703	1	REL606	86704	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__86703__1__REL606__86704__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	364		REL606	87257	-1	REL606	3169602	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__87257__0__REL606__3169602__0__-6__CCGCTG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCGCTG
JC	118		REL606	89182	-1	REL606	3885789	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__89182__0__REL606__3885788__1__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=35	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	405		REL606	92754	-1	REL606	711707	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__92754__0__REL606__711707__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	202		REL606	93690	-1	REL606	3223031	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__93690__0__REL606__3223031__0__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	361		REL606	94518	1	REL606	2622492	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__94518__1__REL606__2622492__1__-1__C__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	177		REL606	97261	-1	REL606	1010965	-1	-6	alignment_overlap=-6	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__97261__0__REL606__1010965__0__-6__CTTCCC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=25	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CTTCCC
JC	349		REL606	98610	-1	REL606	463866	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__98610__0__REL606__463866__0__-4__ATAA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATAA
JC	154		REL606	102008	-1	REL606	721020	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__102008__0__REL606__721029__0__9____36__36__0__0	max_left=22	max_left_minus=22	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=10	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	377		REL606	105924	-1	REL606	2980147	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__105924__0__REL606__2980147__0__-2__GC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	518		REL606	110007	1	REL606	1936701	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__110007__1__REL606__1936701__0__-4__AGGT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGGT
JC	194		REL606	114130	-1	REL606	2343924	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__114130__0__REL606__2343932__0__8____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=14	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	564		REL606	114275	1	REL606	4621346	1	0	alignment_overlap=21	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__114275__1__REL606__4621325__1__21____36__36__0__0	max_left=9	max_left_minus=9	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	526		REL606	114280	1	REL606	3392102	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__114280__1__REL606__3392102__0__0____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	390		REL606	119641	-1	REL606	4317906	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__119641__0__REL606__4317906__1__-5__ACACC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACACC
JC	387		REL606	120088	-1	REL606	435692	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__120088__0__REL606__435692__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	91		REL606	123559	-1	REL606	2540057	-1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__123559__0__REL606__2540066__0__9____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=17	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	68		REL606	129145	-1	REL606	3482911	1	-4	alignment_overlap=-4	coverage_minus=11	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__129145__0__REL606__3482911__1__-4__GGGG__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=10	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11	unique_read_sequence=GGGG
JC	418		REL606	130641	-1	REL606	1971352	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__130641__0__REL606__1971352__1__-2__CG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	422		REL606	132731	-1	REL606	707899	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__132731__0__REL606__707899__0__-6__GATTTT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GATTTT
JC	226		REL606	136438	1	REL606	1232437	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__136438__1__REL606__1232438__0__1____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	499		REL606	136584	-1	REL606	2220269	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__136584__0__REL606__2220269__1__-3__GCG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=10	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCG
JC	369		REL606	140346	1	REL606	3486917	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__140346__1__REL606__3486917__1__-3__GGG__36__36__0__0	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=10	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGG
JC	355		REL606	141595	-1	REL606	252770	1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__141595__0__REL606__252762__1__8____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	489		REL606	146257	-1	REL606	3181585	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__146257__0__REL606__3181585__1__0____36__36__0__0	max_left=4	max_left_minus=0	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	441		REL606	148976	-1	REL606	377027	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__148976__0__REL606__377027__0__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	485		REL606	152492	-1	REL606	4282411	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__152492__0__REL606__4282411__0__-1__A__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	350		REL606	167341	1	REL606	1128078	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__167341__1__REL606__1128086__0__8____36__36__1__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=8	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	322		REL606	171349	-1	REL606	2965006	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__171349__0__REL606__2965006__1__0____36__36__0__1	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	504		REL606	175604	-1	REL606	3185441	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__175604__0__REL606__3185441__1__-3__GTC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTC
JC	67		REL606	179994	1	REL606	1286712	1	0	alignment_overlap=7	coverage_minus=11	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__179994__1__REL606__1286705__1__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=57	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	217		REL606	185105	-1	REL606	216359	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__185105__0__REL606__216359__0__-6__GTAGTG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTAGTG
JC	525		REL606	204547	-1	REL606	2232552	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__204547__0__REL606__2232552__0__-5__GTTCG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTTCG
JC	528		REL606	208469	-1	REL606	3968213	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__208469__0__REL606__3968213__1__-5__CTCAC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTCAC
JC	291		REL606	210448	1	REL606	3140896	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__210448__1__REL606__3140896__0__-4__GCAT__36__36__0__0	max_left=13	max_left_minus=0	max_left_plus=13	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCAT
JC	393		REL606	216295	-1	REL606	373405	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__216295__0__REL606__373405__1__-3__TGA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGA
JC	442		REL606	224562	-1	REL606	466751	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__224562__0__REL606__466751__0__-4__GGCA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGCA
JC	65		REL606	231142	-1	REL606	2054566	-1	0	alignment_overlap=8	coverage_minus=13	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__231142__0__REL606__2054574__0__8____36__36__0__1	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=42	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=13	total_reads=13
JC	330		REL606	233695	-1	REL606	2219174	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__233695__0__REL606__2219174__0__-6__CGACCT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGACCT
JC	332		REL606	240414	1	REL606	1388321	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__240414__1__REL606__1388321__0__0____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	37		REL606	241257	1	REL606	550351	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__241255__1__REL606__550351__1__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=30	max_min_left=16	max_min_left_minus=12	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=7	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=199	pos_hash_score=22	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=27	total_reads=29
JC	11		REL606	241691	1	REL606	3893554	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__241691__1__REL606__3893552__1__2____36__36__1__0	max_left=32	max_left_minus=30	max_left_plus=32	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=16	max_min_right_minus=14	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=253	pos_hash_score=22	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=26	total_reads=55
JC	468		REL606	245746	-1	REL606	2635459	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__245746__0__REL606__2635459__1__-3__GCG__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCG
JC	290		REL606	251548	1	REL606	2521513	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__251548__1__REL606__2521513__0__-6__GTGTTT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTGTTT
JC	143		REL606	252883	1	REL606	2488867	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__252883__1__REL606__2488866__1__1____36__36__0__0	max_left=23	max_left_minus=23	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=25	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	244		REL606	252883	1	REL606	2183973	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__252883__1__REL606__2183973__1__0____36__36__0__1	max_left=4	max_left_minus=2	max_left_plus=4	max_min_left=4	max_min_left_minus=2	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=6	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=1
JC	420		REL606	252883	1	REL606	3202855	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__252883__1__REL606__3202855__0__0____36__36__0__1	max_left=7	max_left_minus=7	max_left_plus=0	max_min_left=7	max_min_left_minus=7	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=29	max_right_plus=0	min_overlap_score=7	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	521		REL606	252886	1	REL606	349787	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__252886__1__REL606__349787__0__0____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	308		REL606	253230	1	REL606	3998217	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__253230__1__REL606__3998217__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	100		REL606	299030	-1	REL606	3545377	-1	-8	alignment_overlap=-8	coverage_minus=2	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__299030__0__REL606__3545377__0__-8__TCATCGAG__36__36__0__0	max_left=14	max_left_minus=14	max_left_plus=14	max_min_left=12	max_min_left_minus=12	max_min_left_plus=0	max_min_right=14	max_min_right_minus=9	max_min_right_plus=14	max_right=14	max_right_minus=14	max_right_plus=14	min_overlap_score=49	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4	unique_read_sequence=TCATCGAG
JC	398		REL606	299408	-1	REL606	3546635	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__299408__0__REL606__3546635__1__0____36__36__0__0	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	115		REL606	305658	-1	REL606	2173883	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__305658__0__REL606__2173883__0__-4__AACC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=22	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=AACC
JC	157		REL606	306945	-1	REL606	3287974	1	-3	alignment_overlap=-3	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__306945__0__REL606__3287974__1__-3__TCT__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=29	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TCT
JC	104		REL606	312594	1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__312594__1__REL606__2583282__0__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=65	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	145		REL606	312594	1	REL606	3150232	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__312594__1__REL606__3150221__1__11____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=22	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	384		REL606	312625	-1	REL606	1001487	1	0	alignment_overlap=17	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__312625__0__REL606__1001470__1__17____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=17	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	484		REL606	312626	-1	REL606	4603893	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__312626__0__REL606__4603902__0__9____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	513		REL606	320232	1	REL606	1364934	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__320232__1__REL606__1364934__0__-4__CACG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CACG
JC	546		REL606	321457	-1	REL606	4212854	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__321457__0__REL606__4212854__1__0____36__36__0__1	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	413		REL606	322250	1	REL606	322621	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__322250__1__REL606__322622__0__1____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	97		REL606	326202	1	REL606	2151219	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__326202__1__REL606__2151228__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=21	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=4
JC	385		REL606	327793	1	REL606	404213	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__327793__1__REL606__404213__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	467		REL606	327859	1	REL606	982633	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__327859__1__REL606__982633__1__-1__T__36__36__0__0	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	592		REL606	330032	1	REL606	330430	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__330032__1__REL606__330430__0__-1__C__36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	272		REL606	333267	-1	REL606	1991698	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__333267__0__REL606__1991698__1__-3__CGC__36__36__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGC
JC	139		REL606	339751	-1	REL606	4377768	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__339751__0__REL606__4377768__0__-1__A__36__36__0__0	max_left=17	max_left_minus=12	max_left_plus=17	max_min_left=12	max_min_left_minus=12	max_min_left_plus=0	max_min_right=13	max_min_right_minus=0	max_min_right_plus=13	max_right=15	max_right_minus=15	max_right_plus=13	min_overlap_score=25	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=A
JC	462		REL606	339799	-1	REL606	2696408	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__339799__0__REL606__2696408__1__-1__G__36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	249		REL606	349677	1	REL606	4603827	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__349677__1__REL606__4603830__0__3____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	17		REL606	353264	1	REL606	1428800	-1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__353263__1__REL606__1428800__0__1____36__36__1__0	max_left=32	max_left_minus=26	max_left_plus=32	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=16	max_min_right_minus=16	max_min_right_plus=14	max_right=34	max_right_minus=34	max_right_plus=25	min_overlap_score=315	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=30	total_reads=43
JC	425		REL606	355640	-1	REL606	3327285	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__355640__0__REL606__3327287__0__2____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	168		REL606	363414	-1	REL606	859405	-1	-6	alignment_overlap=-6	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__363414__0__REL606__859405__0__-6__GTTGGT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=29	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GTTGGT
JC	351		REL606	363785	-1	REL606	2879565	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__363785__0__REL606__2879565__0__-4__GGCG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=-3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGCG
JC	548		REL606	367630	-1	REL606	3943305	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__367630__0__REL606__3943305__1__-1__C__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	577		REL606	376719	-1	REL606	3977719	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__376719__0__REL606__3977719__1__-1__C__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	545		REL606	377738	-1	REL606	3333291	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__377738__0__REL606__3333291__0__-4__GGTG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=-3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGTG
JC	553		REL606	378379	-1	REL606	4367133	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__378379__0__REL606__4367133__0__-5__NACAG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=NACAG
JC	273		REL606	380289	-1	REL606	712215	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__380289__0__REL606__712215__0__-4__CCTC__36__36__0__1	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCTC
JC	180		REL606	384109	-1	REL606	3529501	-1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__384109__0__REL606__3529501__0__-2__GG__36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GG
JC	352		REL606	385911	-1	REL606	4476446	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__385911__0__REL606__4476446__0__-5__GGGCG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGGCG
JC	132		REL606	385961	-1	REL606	1516892	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__385961__0__REL606__1516892__0__-4__CACC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=16	max_right_minus=16	max_right_plus=16	min_overlap_score=48	pos_hash_score=2	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=CACC
JC	500		REL606	392273	1	REL606	892227	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__392273__1__REL606__892224__1__3____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	453		REL606	397076	1	REL606	3817298	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__397076__1__REL606__3817299__0__1____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	601		REL606	399474	1	REL606	1059095	-1	0	alignment_overlap=14	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__399474__1__REL606__1059109__0__14____36__36__0__0	max_left=7	max_left_minus=7	max_left_plus=0	max_min_left=7	max_min_left_minus=7	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=7	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	134		REL606	405973	1	REL606	2907688	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__405973__1__REL606__2907688__1__-4__GCGG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=42	pos_hash_score=1	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GCGG
JC	381		REL606	409668	1	REL606	779911	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__409668__1__REL606__779911__0__-1__G__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	519		REL606	410903	-1	REL606	1430918	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__410903__0__REL606__1430918__1__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	594		REL606	415771	-1	REL606	4005307	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__415771__0__REL606__4005310__0__3____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=0	max_min_right_plus=10	max_right=10	max_right_minus=0	max_right_plus=10	min_overlap_score=10	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	416		REL606	421689	1	REL606	548185	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__421689__1__REL606__548185__0__-5__AGCAG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGCAG
JC	366		REL606	432244	1	REL606	1652747	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__432244__1__REL606__1652747__0__-6__GTGATT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTGATT
JC	458		REL606	434965	-1	REL606	3782693	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__434965__0__REL606__3782693__0__-6__GCAGGA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCAGGA
JC	575		REL606	441209	-1	REL606	2181097	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__441209__0__REL606__2181097__0__-1__G__36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	93		REL606	441294	-1	REL606	3972314	-1	-4	alignment_overlap=-4	coverage_minus=5	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__441294__0__REL606__3972314__0__-4__CCGC__36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=25	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5	unique_read_sequence=CCGC
JC	517		REL606	459220	1	REL606	1162226	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__459220__1__REL606__1162226__1__-2__CC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CC
JC	578		REL606	472295	-1	REL606	809827	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__472295__0__REL606__809828__0__1____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	221		REL606	486923	-1	REL606	4472634	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__486923__0__REL606__4472634__1__-1__G__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	127		REL606	494035	1	REL606	3559287	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__494035__1__REL606__3559287__0__-6__GGGGCG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=10	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GGGGCG
JC	298		REL606	494742	-1	REL606	1466320	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__494742__0__REL606__1466320__1__0____36__36__0__0	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	248		REL606	498500	1	REL606	3318543	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__498500__1__REL606__3318543__1__-6__CCCGNT__36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCCGNT
JC	302		REL606	500026	-1	REL606	895658	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__500026__0__REL606__895656__1__2____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	314		REL606	506992	-1	REL606	2480573	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__506992__0__REL606__2480573__1__0____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	83		REL606	507308	1	REL606	1703327	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__507308__1__REL606__1703327__0__0____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=49	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	296		REL606	508668	1	REL606	1890153	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__508668__1__REL606__1890153__1__-1__C__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	438		REL606	509773	-1	REL606	3825723	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__509773__0__REL606__3825723__1__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	466		REL606	512167	-1	REL606	1282025	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__512167__0__REL606__1282025__1__-1__C__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	183		REL606	517203	1	REL606	2468667	-1	-3	alignment_overlap=-3	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__517203__1__REL606__2468667__0__-3__CCA__36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=13	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CCA
JC	325		REL606	518051	-1	REL606	1578245	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__518051__0__REL606__1578244__1__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	265		REL606	522237	1	REL606	1453567	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__522237__1__REL606__1453567__1__-6__ATCGGG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATCGGG
JC	415		REL606	523507	1	REL606	3666669	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__523507__1__REL606__3666662__1__7____36__36__0__1	max_left=3	max_left_minus=3	max_left_plus=0	max_min_left=3	max_min_left_minus=3	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=26	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	497		REL606	525058	-1	REL606	2609836	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__525058__0__REL606__2609836__1__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	10		REL606	546191	1	REL606	4521571	1	0	alignment_overlap=3	coverage_minus=17	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__546190__1__REL606__4521569__1__3____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=10	max_min_right_minus=10	max_min_right_plus=9	max_right=32	max_right_minus=30	max_right_plus=32	min_overlap_score=195	pos_hash_score=21	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=25	total_reads=58
JC	51		REL606	546199	-1	REL606	2143831	-1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__546199__0__REL606__2143833__0__2____36__36__0__1	max_left=31	max_left_minus=28	max_left_plus=31	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=9	max_right=33	max_right_minus=32	max_right_plus=33	min_overlap_score=186	pos_hash_score=19	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=22	total_reads=25
JC	188		REL606	547917	1	REL606	2529540	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__547917__1__REL606__2529540__1__0____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=26	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	186		REL606	551345	1	REL606	2499575	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__551345__1__REL606__2499575__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=30	max_right_minus=15	max_right_plus=30	min_overlap_score=19	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	323		REL606	551403	-1	REL606	2874180	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__551403__0__REL606__2874180__0__-3__GAA__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GAA
JC	53		REL606	553354	1	REL606	1615472	1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__553354__1__REL606__1615471__1__1____36__36__0__1	max_left=27	max_left_minus=9	max_left_plus=27	max_min_left=14	max_min_left_minus=9	max_min_left_plus=14	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=112	pos_hash_score=13	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=15	total_reads=24
JC	395		REL606	553444	-1	REL606	2917872	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__553444__0__REL606__2917872__1__-6__TCTTCT__36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TCTTCT
JC	300		REL606	574077	-1	REL606	2199043	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__574077__0__REL606__2199041__1__2____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	379		REL606	576041	-1	REL606	2703885	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__576041__0__REL606__2703885__0__-4__TTAT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTAT
JC	605		REL606	578552	1	REL606	3333963	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__578552__1__REL606__3333963__1__-5__GATCA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GATCA
JC	55		REL606	581861	-1	REL606	664688	1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__581861__0__REL606__664686__1__2____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=16	max_min_right_minus=4	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=23	min_overlap_score=210	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=22	total_reads=24
JC	250		REL606	587331	-1	REL606	2974745	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__587331__0__REL606__2974743__1__2____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	6		REL606	588495	1	REL606	643364	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__643365__0__1____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=29	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=297	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=29	total_reads=64
JC	7		REL606	588495	1	REL606	1270660	1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__1270658__1__2____36__36__1__1	max_left=32	max_left_minus=29	max_left_plus=32	max_min_left=15	max_min_left_minus=15	max_min_left_plus=10	max_min_right=17	max_min_right_minus=14	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=31	min_overlap_score=190	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=23	total_reads=64
JC	19		REL606	588495	1	REL606	4289282	-1	-3	alignment_overlap=-3	coverage_minus=25	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__4289282__0__-3__CTC__36__36__1__0	max_left=35	max_left_minus=33	max_left_plus=35	max_min_left=16	max_min_left_minus=13	max_min_left_plus=16	max_min_right=14	max_min_right_minus=12	max_min_right_plus=14	max_right=34	max_right_minus=34	max_right_plus=33	min_overlap_score=223	pos_hash_score=26	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=39	total_reads=39	unique_read_sequence=CTC
JC	46		REL606	588495	1	REL606	4588158	-1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__588494__1__REL606__4588158__0__1____36__36__1__0	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=17	max_min_left_minus=15	max_min_left_plus=17	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=211	pos_hash_score=22	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=25	total_reads=26
JC	532		REL606	588497	1	REL606	4588158	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__588497__1__REL606__4588158__0__-2__TA__36__36__1__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=35	max_right_minus=35	max_right_plus=35	min_overlap_score=20	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=1	unique_read_sequence=TA
JC	98		REL606	589239	-1	REL606	1331408	-1	-3	alignment_overlap=-3	coverage_minus=3	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__589239__0__REL606__1331408__0__-3__AGG__36__36__0__1	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=34	max_right_minus=16	max_right_plus=34	min_overlap_score=22	pos_hash_score=3	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=4	total_reads=4	unique_read_sequence=AGG
JC	175		REL606	590325	-1	REL606	812191	-1	-6	alignment_overlap=-6	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__590325__0__REL606__812191__0__-6__AGACAT__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=29	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=AGACAT
JC	24		REL606	590471	-1	REL606	1776437	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__1776437__0__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=15	max_min_left_minus=14	max_min_left_plus=15	max_min_right=16	max_min_right_minus=12	max_min_right_plus=16	max_right=33	max_right_minus=30	max_right_plus=33	min_overlap_score=249	pos_hash_score=25	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=34	total_reads=35
JC	38		REL606	590471	-1	REL606	4415712	-1	0	alignment_overlap=2	coverage_minus=14	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__4415713__0__2____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=30	max_min_left=16	max_min_left_minus=16	max_min_left_plus=11	max_min_right=14	max_min_right_minus=14	max_min_right_plus=10	max_right=33	max_right_minus=30	max_right_plus=33	min_overlap_score=193	pos_hash_score=22	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=25	total_reads=28
JC	52		REL606	590471	-1	REL606	3268052	1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__3268052__1__1____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=15	max_min_left_minus=12	max_min_left_plus=15	max_min_right=17	max_min_right_minus=17	max_min_right_plus=13	max_right=33	max_right_minus=26	max_right_plus=33	min_overlap_score=199	pos_hash_score=21	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=24	total_reads=24
JC	62		REL606	590471	-1	REL606	1269593	-1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__590473__0__REL606__1269593__0__2____36__36__1__1	max_left=33	max_left_minus=29	max_left_plus=33	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=14	max_right=20	max_right_minus=17	max_right_plus=20	min_overlap_score=80	pos_hash_score=10	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=10	total_reads=18
JC	34		REL606	590473	-1	REL606	1451972	-1	0	alignment_overlap=4	coverage_minus=10	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__590477__0__REL606__1451972__0__4____36__36__0__0	max_left=29	max_left_minus=26	max_left_plus=29	max_min_left=13	max_min_left_minus=11	max_min_left_plus=13	max_min_right=14	max_min_right_minus=13	max_min_right_plus=14	max_right=29	max_right_minus=27	max_right_plus=29	min_overlap_score=154	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=4	side_2_redundant=0	total_non_overlap_reads=20	total_reads=29
JC	57		REL606	590715	1	REL606	3625445	-1	0	alignment_overlap=4	coverage_minus=8	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__590714__1__REL606__3625448__0__4____36__36__1__0	max_left=30	max_left_minus=27	max_left_plus=30	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=16	max_min_right_minus=6	max_min_right_plus=16	max_right=30	max_right_minus=30	max_right_plus=18	min_overlap_score=158	pos_hash_score=15	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=17	total_reads=22
JC	61		REL606	590715	1	REL606	2322345	-1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__590714__1__REL606__2322348__0__4____36__36__1__0	max_left=30	max_left_minus=29	max_left_plus=30	max_min_left=13	max_min_left_minus=13	max_min_left_plus=13	max_min_right=12	max_min_right_minus=11	max_min_right_plus=12	max_right=31	max_right_minus=31	max_right_plus=27	min_overlap_score=108	pos_hash_score=13	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=14	total_reads=18
JC	13		REL606	592057	-1	REL606	2322340	1	0	alignment_overlap=5	coverage_minus=9	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__592059__0__REL606__2322337__1__5____36__36__1__0	max_left=30	max_left_minus=26	max_left_plus=30	max_min_left=14	max_min_left_minus=12	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=13	max_right=30	max_right_minus=30	max_right_plus=28	min_overlap_score=177	pos_hash_score=22	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=25	total_reads=49
JC	85		REL606	594866	-1	REL606	2684870	-1	-3	alignment_overlap=-3	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__594866__0__REL606__2684870__0__-3__CCC__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=44	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6	unique_read_sequence=CCC
JC	380		REL606	599628	1	REL606	2637892	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__599628__1__REL606__2637892__1__-1__A__36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	588		REL606	602821	1	REL606	3163696	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__602821__1__REL606__3163696__0__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	271		REL606	602827	1	REL606	2138466	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__602827__1__REL606__2138466__0__-2__GG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GG
JC	571		REL606	603832	1	REL606	3204512	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__603832__1__REL606__3204512__0__0____36__36__0__0	max_left=21	max_left_minus=0	max_left_plus=21	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	392		REL606	608679	-1	REL606	2524957	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__608679__0__REL606__2524957__1__-6__ACGTCG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACGTCG
JC	261		REL606	621199	-1	REL606	1787712	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__621199__0__REL606__1787712__1__0____36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	2		REL606	625889	1	REL606	628821	-1	0	alignment_overlap=1	coverage_minus=33	coverage_plus=39	flanking_left=36	flanking_right=36	key=REL606__625889__1__REL606__628822__0__1____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=33	max_min_left=17	max_min_left_minus=17	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=32	min_overlap_score=621	pos_hash_score=46	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=72	total_reads=74
JC	514		REL606	627806	1	REL606	1282595	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__627806__1__REL606__1282595__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	336		REL606	635364	-1	REL606	2072525	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__635364__0__REL606__2072525__1__-1__C__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	22		REL606	643362	1	REL606	3894996	-1	0	alignment_overlap=3	coverage_minus=18	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__643361__1__REL606__3894998__0__3____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=29	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=271	pos_hash_score=22	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=30	total_reads=36
JC	454		REL606	653658	-1	REL606	1314166	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__653658__0__REL606__1314166__1__-3__CAG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAG
JC	21		REL606	664686	1	REL606	4613019	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=24	flanking_left=36	flanking_right=36	key=REL606__664686__1__REL606__4613019__0__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=35	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=18	max_min_right_minus=14	max_min_right_plus=18	max_right=35	max_right_minus=35	max_right_plus=32	min_overlap_score=323	pos_hash_score=28	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=36	total_reads=36
JC	14		REL606	664688	1	REL606	1153896	-1	0	alignment_overlap=4	coverage_minus=16	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__664686__1__REL606__1153898__0__4____36__36__0__0	max_left=30	max_left_minus=28	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=10	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=29	max_right_minus=29	max_right_plus=27	min_overlap_score=280	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=31	total_reads=45
JC	43		REL606	664688	1	REL606	1776434	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__664687__1__REL606__1776434__1__1____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=31	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=15	max_min_right_minus=15	max_min_right_plus=14	max_right=34	max_right_minus=27	max_right_plus=34	min_overlap_score=185	pos_hash_score=18	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=22	total_reads=27
JC	48		REL606	664688	1	REL606	2899615	1	0	alignment_overlap=4	coverage_minus=8	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__664686__1__REL606__2899613__1__4____36__36__1__0	max_left=27	max_left_minus=25	max_left_plus=27	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=13	max_min_right_minus=10	max_min_right_plus=13	max_right=30	max_right_minus=30	max_right_plus=29	min_overlap_score=186	pos_hash_score=18	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=20	total_reads=26
JC	49		REL606	664688	1	REL606	2122426	1	0	alignment_overlap=3	coverage_minus=11	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__664685__1__REL606__2122426__1__3____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=23	max_min_left=16	max_min_left_minus=6	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=25	min_overlap_score=223	pos_hash_score=15	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=21	total_reads=25
JC	16		REL606	666130	-1	REL606	1729054	-1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__666130__0__REL606__1729054__0__0____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=30	max_min_left=17	max_min_left_minus=17	max_min_left_plus=12	max_min_right=18	max_min_right_minus=18	max_min_right_plus=16	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=330	pos_hash_score=26	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=39	total_reads=43
JC	20		REL606	666130	-1	REL606	3192744	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__666130__0__REL606__3192744__1__0____36__36__0__1	max_left=34	max_left_minus=32	max_left_plus=34	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=13	max_right=35	max_right_minus=32	max_right_plus=35	min_overlap_score=296	pos_hash_score=28	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=37	total_reads=37
JC	47		REL606	666130	-1	REL606	4110239	-1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__666131__0__REL606__4110239__0__1____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=12	max_min_right=17	max_min_right_minus=17	max_min_right_plus=8	max_right=33	max_right_minus=30	max_right_plus=33	min_overlap_score=189	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=25	total_reads=26
JC	147		REL606	673321	1	REL606	3279785	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__673321__1__REL606__3279785__0__-3__CCC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=25	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CCC
JC	86		REL606	674129	1	REL606	3966824	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__674129__1__REL606__3966824__0__-2__CC__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=25	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6	unique_read_sequence=CC
JC	141		REL606	674808	-1	REL606	4313396	1	-7	alignment_overlap=-7	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__674808__0__REL606__4313396__1__-7__CTTCCTC__36__36__0__0	max_left=14	max_left_minus=14	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=28	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CTTCCTC
JC	426		REL606	689851	-1	REL606	3944199	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__689851__0__REL606__3944199__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	192		REL606	690461	1	REL606	2948149	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__690461__1__REL606__2948149__1__-2__CG__36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=0	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CG
JC	211		REL606	690723	1	REL606	3365239	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__690723__1__REL606__3365239__0__-2__CG__36__36__0__1	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	165		REL606	692154	-1	REL606	2625512	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__692154__0__REL606__2625512__0__-4__CGAA__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=29	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CGAA
JC	262		REL606	697136	-1	REL606	4143407	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__697133__0__REL606__4143407__0__3____36__36__1__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	493		REL606	708421	1	REL606	1431245	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__708421__1__REL606__1431245__1__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	397		REL606	711283	1	REL606	1193318	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__711283__1__REL606__1193318__1__0____36__36__0__0	max_left=33	max_left_minus=0	max_left_plus=33	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_right=2	max_right_minus=0	max_right_plus=2	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	89		REL606	711812	-1	REL606	4223448	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__711812__0__REL606__4223448__0__0____36__36__1__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=47	pos_hash_score=4	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	602		REL606	721845	1	REL606	2341071	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__721845__1__REL606__2341071__1__-4__TGGC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGGC
JC	374		REL606	725918	-1	REL606	4478783	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__725918__0__REL606__4478784__0__1____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	523		REL606	729580	-1	REL606	1733293	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__729580__0__REL606__1733292__1__1____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	356		REL606	733214	1	REL606	1680971	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__733214__1__REL606__1680971__0__-1__G__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	496		REL606	735536	-1	REL606	1595092	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__735536__0__REL606__1595092__0__-5__TTAAA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTAAA
JC	320		REL606	737753	1	REL606	1287605	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__737753__1__REL606__1287605__0__-5__AATGC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AATGC
JC	345		REL606	742977	-1	REL606	2842006	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__742977__0__REL606__2842004__1__2____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	474		REL606	743678	1	REL606	1180343	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__743678__1__REL606__1180343__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	105		REL606	760791	1	REL606	3131593	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__760791__1__REL606__3131593__0__-6__TGCCAC__36__36__0__0	max_left=16	max_left_minus=13	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=12	max_min_right_plus=15	max_right=15	max_right_minus=12	max_right_plus=15	min_overlap_score=54	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4	unique_read_sequence=TGCCAC
JC	340		REL606	765743	-1	REL606	4270141	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__765743__0__REL606__4270141__0__-4__ATGA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATGA
JC	554		REL606	766503	-1	REL606	4555823	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__766503__0__REL606__4555823__0__-6__TGAAGT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGAAGT
JC	436		REL606	768688	1	REL606	2310029	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__768688__1__REL606__2310031__0__2____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	515		REL606	784749	-1	REL606	1946073	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__784749__0__REL606__1946073__0__-4__GGCT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGCT
JC	281		REL606	819763	-1	REL606	2498362	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__819763__0__REL606__2498362__0__-4__GCTG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCTG
JC	600		REL606	820019	-1	REL606	3252776	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__820019__0__REL606__3252776__0__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	570		REL606	830077	-1	REL606	1100853	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__830077__0__REL606__1100853__1__-6__GTCTGG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTCTGG
JC	483		REL606	833668	1	REL606	2437422	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__833668__1__REL606__2437422__0__-1__G__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	293		REL606	843439	1	REL606	4577785	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__843439__1__REL606__4577785__1__0____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	531		REL606	851091	-1	REL606	929391	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__851091__0__REL606__929391__0__-2__GC__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=0	max_right_plus=31	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	576		REL606	860217	-1	REL606	1850888	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__860217__0__REL606__1850891__0__3____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	440		REL606	863560	-1	REL606	3725322	1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__863560__0__REL606__3725322__1__-6__ACCCAG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACCCAG
JC	547		REL606	865946	-1	REL606	1831044	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__865946__0__REL606__1831044__0__-5__CAGCG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAGCG
JC	368		REL606	866389	1	REL606	1692975	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__866389__1__REL606__1692975__1__-2__GA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GA
JC	294		REL606	867020	1	REL606	3949807	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__867020__1__REL606__3949807__0__-1__A__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	225		REL606	868205	-1	REL606	4402761	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__868205__0__REL606__4402762__0__1____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	311		REL606	868694	-1	REL606	3694889	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__868694__0__REL606__3694889__1__-2__AA__36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AA
JC	447		REL606	882914	-1	REL606	1583609	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__882914__0__REL606__1583607__1__2____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	230		REL606	883207	1	REL606	1885438	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__883207__1__REL606__1885438__0__-4__TTGC__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTGC
JC	357		REL606	888606	1	REL606	2460723	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__888606__1__REL606__2460723__1__-1__T__36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	210		REL606	893091	1	REL606	3058178	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__893091__1__REL606__3058172__1__6____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	121		REL606	893111	1	REL606	1690325	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__893111__1__REL606__1690325__0__-3__AAG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=28	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=AAG
JC	156		REL606	893130	-1	REL606	4087380	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__893130__0__REL606__4087380__1__0____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=8	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	394		REL606	905402	-1	REL606	4337907	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__905402__0__REL606__4337907__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	456		REL606	911443	1	REL606	1647378	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__911443__1__REL606__1647378__1__-1__A__36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	503		REL606	912515	1	REL606	2455390	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__912515__1__REL606__2455390__1__-3__AGC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGC
JC	334		REL606	913099	-1	REL606	1442205	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__913099__0__REL606__1442205__0__-4__GCCG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCCG
JC	331		REL606	913278	1	REL606	1858446	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__913278__1__REL606__1858446__1__-3__CCA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCA
JC	473		REL606	916292	-1	REL606	1961885	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__916292__0__REL606__1961885__1__-5__CAGCA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAGCA
JC	277		REL606	916478	-1	REL606	2374547	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__916478__0__REL606__2374548__0__1____36__36__0__1	max_left=2	max_left_minus=2	max_left_plus=0	max_min_left=2	max_min_left_minus=2	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=32	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	195		REL606	918458	-1	REL606	2026943	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__918458__0__REL606__2026954__0__11____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=10	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	432		REL606	926486	-1	REL606	2772589	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__926486__0__REL606__2772590__0__1____36__36__0__1	max_left=3	max_left_minus=0	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	269		REL606	931735	1	REL606	4373367	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__931735__1__REL606__4373367__0__-1__G__36__36__0__0	max_left=3	max_left_minus=0	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	167		REL606	932283	-1	REL606	1802429	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__932283__0__REL606__1802431__0__2____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=27	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	455		REL606	947159	-1	REL606	4287431	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__947159__0__REL606__4287431__1__-2__TG__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TG
JC	278		REL606	952018	-1	REL606	1096352	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__952018__0__REL606__1096352__1__-3__TGC__36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGC
JC	120		REL606	952541	1	REL606	3141124	1	-2	alignment_overlap=-2	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__952541__1__REL606__3141124__1__-2__GA__36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=34	pos_hash_score=6	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=3	unique_read_sequence=GA
JC	103		REL606	964804	-1	REL606	1370446	-1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__964804__0__REL606__1370451__0__5____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=33	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	228		REL606	969731	1	REL606	3185620	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__969731__1__REL606__3185620__0__-5__GCTAT__36__36__0__0	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_right=11	max_right_minus=0	max_right_plus=11	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCTAT
JC	162		REL606	974972	-1	REL606	1545048	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__974972__0__REL606__1545048__0__0____36__36__0__1	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=2
JC	406		REL606	986565	-1	REL606	3949546	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__986565__0__REL606__3949546__1__-1__A__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	363		REL606	986653	-1	REL606	1713002	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__986653__0__REL606__1713002__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	126		REL606	992481	1	REL606	1448069	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__992481__1__REL606__1448069__0__-2__GC__36__36__0__0	max_left=21	max_left_minus=0	max_left_plus=21	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=32	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GC
JC	344		REL606	997465	-1	REL606	4026329	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__997465__0__REL606__4026329__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	179		REL606	997815	-1	REL606	1431242	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__997815__0__REL606__1431242__0__-5__AGAAG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=34	max_right_minus=15	max_right_plus=34	min_overlap_score=11	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=AGAAG
JC	78		REL606	1006966	-1	REL606	2088772	-1	0	alignment_overlap=8	coverage_minus=7	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1006966__0__REL606__2088780__0__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=21	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	509		REL606	1011742	1	REL606	2778646	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1011742__1__REL606__2778645__1__1____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	590		REL606	1014943	1	REL606	2642051	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1014943__1__REL606__2642051__1__-2__GG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GG
JC	182		REL606	1021723	-1	REL606	3481754	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1021723__0__REL606__3481754__0__0____36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=18	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	286		REL606	1027941	-1	REL606	2057447	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1027941__0__REL606__2057447__0__-4__CGGA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGGA
JC	403		REL606	1028485	-1	REL606	2748131	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1028485__0__REL606__2748131__1__-4__GATG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GATG
JC	491		REL606	1033217	-1	REL606	3193017	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1033217__0__REL606__3193017__1__-6__CNCAGA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CNCAGA
JC	445		REL606	1041663	-1	REL606	4511169	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1041663__0__REL606__4511169__0__-4__ATCA__36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATCA
JC	237		REL606	1041929	1	REL606	2906210	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1041929__1__REL606__2906210__0__-1__C__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	596		REL606	1047629	-1	REL606	1744080	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1047629__0__REL606__1744079__1__1____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	478		REL606	1049710	-1	REL606	1534615	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1049710__0__REL606__1534615__0__-2__TG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=-1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TG
JC	566		REL606	1059107	-1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1059107__0__REL606__2583282__0__0____36__36__1__0	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	533		REL606	1062852	1	REL606	1078560	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1062852__1__REL606__1078560__0__-2__AC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AC
JC	209		REL606	1071334	-1	REL606	1931827	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1071334__0__REL606__1931827__1__-1__C__36__36__0__0	max_left=14	max_left_minus=14	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	109		REL606	1077107	-1	REL606	1686159	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1077107__0__REL606__1686166__0__7____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=17	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	411		REL606	1078747	-1	REL606	4364813	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1078747__0__REL606__4364813__0__-4__CGGG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGGG
JC	260		REL606	1083812	1	REL606	4115543	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1083812__1__REL606__4115543__0__-1__C__36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	327		REL606	1084481	1	REL606	1105468	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1084481__1__REL606__1105468__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	80		REL606	1086285	-1	REL606	4589306	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1086285__0__REL606__4589306__0__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=38	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	276		REL606	1090432	-1	REL606	3374156	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1090432__0__REL606__3374156__1__-3__ATG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATG
JC	190		REL606	1111736	1	REL606	4555218	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1111736__1__REL606__4555218__1__0____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=17	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	160		REL606	1117214	-1	REL606	4199006	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1117214__0__REL606__4199006__0__-2__GG__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=15	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GG
JC	573		REL606	1117445	1	REL606	1471563	1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1117445__1__REL606__1471563__1__-5__CACTA__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=-4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CACTA
JC	335		REL606	1119719	1	REL606	3400895	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1119719__1__REL606__3400895__0__-6__AATCAT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AATCAT
JC	433		REL606	1125818	1	REL606	2232013	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1125818__1__REL606__2232013__0__-5__GGGTA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGGTA
JC	585		REL606	1137641	-1	REL606	2705506	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1137641__0__REL606__2705507__0__1____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	538		REL606	1142616	-1	REL606	3521764	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1142616__0__REL606__3521764__0__-6__ACTCCC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACTCCC
JC	69		REL606	1154778	1	REL606	3580308	1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1154778__1__REL606__3580300__1__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=38	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	444		REL606	1155425	-1	REL606	1956453	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1155425__0__REL606__1956453__1__0____36__36__1__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	178		REL606	1158160	-1	REL606	1431427	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1158160__0__REL606__1431427__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	354		REL606	1163815	-1	REL606	3846238	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1163815__0__REL606__3846238__1__-1__A__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	189		REL606	1167462	-1	REL606	3089960	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1167462__0__REL606__3089960__1__-2__GC__36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=13	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GC
JC	108		REL606	1173905	1	REL606	2208799	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__1173905__1__REL606__2208807__0__8____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=21	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	76		REL606	1183983	1	REL606	1550043	1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__1183983__1__REL606__1550038__1__5____36__36__0__0	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=48	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	287		REL606	1188075	1	REL606	2726650	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1188075__1__REL606__2726650__1__0____36__36__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	119		REL606	1189352	-1	REL606	4547781	1	-4	alignment_overlap=-4	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1189352__0__REL606__4547781__1__-4__TCCC__36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=22	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=TCCC
JC	155		REL606	1191968	1	REL606	1578209	1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1191968__1__REL606__1578209__1__-2__TG__36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TG
JC	586		REL606	1192529	1	REL606	2888474	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1192529__1__REL606__2888474__0__-2__TC__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TC
JC	451		REL606	1203738	-1	REL606	1318567	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1203738__0__REL606__1318567__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	92		REL606	1204294	1	REL606	4311508	-1	0	alignment_overlap=14	coverage_minus=5	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1204294__1__REL606__4311522__0__14____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=23	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	412		REL606	1220435	-1	REL606	2011945	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1220435__0__REL606__2011945__1__-3__GTT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTT
JC	560		REL606	1222475	1	REL606	2978116	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1222475__1__REL606__2978116__1__-1__G__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	172		REL606	1238170	1	REL606	4503661	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1238170__1__REL606__4503661__1__-4__GCTA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=24	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GCTA
JC	66		REL606	1238359	1	REL606	3298225	1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__1238359__1__REL606__3298220__1__5____36__36__0__0	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=63	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	568		REL606	1241496	-1	REL606	4110305	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1241496__0__REL606__4110306__0__1____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	116		REL606	1246574	-1	REL606	1254973	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1246574__0__REL606__1254973__1__-1__G__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=28	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=G
JC	461		REL606	1249634	-1	REL606	1579506	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1249634__0__REL606__1579506__0__-3__TTT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTT
JC	101		REL606	1252950	1	REL606	2490730	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__1252950__1__REL606__2490730__1__-4__GGGC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=21	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4	unique_read_sequence=GGGC
JC	122		REL606	1254797	1	REL606	1333122	-1	0	alignment_overlap=14	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1254797__1__REL606__1333136__0__14____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=11	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	479		REL606	1260485	-1	REL606	4117644	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1260485__0__REL606__4117644__0__-5__ACCGT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACCGT
JC	505		REL606	1267032	-1	REL606	2061184	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1267032__0__REL606__2061184__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	410		REL606	1275876	1	REL606	4371874	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1275876__1__REL606__4371874__1__-3__ACC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACC
JC	342		REL606	1281293	-1	REL606	1328175	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1281293__0__REL606__1328175__1__-4__TCGC__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TCGC
JC	510		REL606	1286131	1	REL606	1286132	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1286131__1__REL606__1286132__1__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=21	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	306		REL606	1301637	1	REL606	3848523	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1301637__1__REL606__3848523__0__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	481		REL606	1314004	-1	REL606	2796639	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1314004__0__REL606__2796639__0__-4__GTGC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTGC
JC	556		REL606	1320933	1	REL606	1880767	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1320933__1__REL606__1880767__0__-2__GC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	268		REL606	1322026	1	REL606	2207808	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1322026__1__REL606__2207808__0__-4__CGCC__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGCC
JC	358		REL606	1331408	-1	REL606	2775133	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1331408__0__REL606__2775133__1__-3__GGC__36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGC
JC	170		REL606	1332781	-1	REL606	4607380	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1332781__0__REL606__4607380__0__0____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=18	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=15	max_min_right_minus=1	max_min_right_plus=15	max_right=22	max_right_minus=1	max_right_plus=22	min_overlap_score=44	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=4	total_reads=2
JC	507		REL606	1335855	1	REL606	2073531	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1335855__1__REL606__2073531__0__-5__CCCGC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCCGC
JC	550		REL606	1340936	-1	REL606	2778205	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1340936__0__REL606__2778205__1__-2__CA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CA
JC	429		REL606	1342659	-1	REL606	4445513	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1342659__0__REL606__4445513__0__-5__AGAAA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGAAA
JC	341		REL606	1345864	-1	REL606	4154072	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1345864__0__REL606__4154072__1__-5__TTTTA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTTTA
JC	252		REL606	1348016	1	REL606	1667848	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1348016__1__REL606__1667848__0__0____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	347		REL606	1365634	1	REL606	2809340	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1365634__1__REL606__2809340__0__0____36__36__0__0	max_left=14	max_left_minus=14	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	130		REL606	1379084	-1	REL606	2326257	-1	-8	alignment_overlap=-8	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1379084__0__REL606__2326257__0__-8__AGCAGCCG__36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=38	pos_hash_score=2	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=AGCAGCCG
JC	572		REL606	1380652	-1	REL606	3564158	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1380652__0__REL606__3564158__1__-4__CTGG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTGG
JC	542		REL606	1408639	1	REL606	1888344	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1408639__1__REL606__1888344__0__-2__AT__36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AT
JC	23		REL606	1420709	1	REL606	2883966	-1	0	alignment_overlap=3	coverage_minus=8	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__1420707__1__REL606__2883967__0__3____36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=29	max_min_left=15	max_min_left_minus=15	max_min_left_plus=12	max_min_right=14	max_min_right_minus=14	max_min_right_plus=14	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=157	pos_hash_score=16	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=19	total_reads=35
JC	60		REL606	1420712	-1	REL606	1442637	1	0	alignment_overlap=2	coverage_minus=10	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__1420712__0__REL606__1442635__1__2____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=29	max_min_left=16	max_min_left_minus=11	max_min_left_plus=16	max_min_right=10	max_min_right_minus=10	max_min_right_plus=8	max_right=33	max_right_minus=28	max_right_plus=33	min_overlap_score=139	pos_hash_score=14	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=18	total_reads=19
JC	4		REL606	1428792	1	REL606	1973272	1	0	alignment_overlap=4	coverage_minus=12	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__1428790__1__REL606__1973270__1__4____36__36__0__1	max_left=29	max_left_minus=29	max_left_plus=28	max_min_left=14	max_min_left_minus=14	max_min_left_plus=14	max_min_right=16	max_min_right_minus=16	max_min_right_plus=13	max_right=31	max_right_minus=29	max_right_plus=31	min_overlap_score=168	pos_hash_score=19	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=20	total_reads=70
JC	529		REL606	1429968	-1	REL606	2608374	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1429968__0__REL606__2608372__1__2____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	129		REL606	1431178	-1	REL606	4080608	-1	-4	alignment_overlap=-4	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1431178__0__REL606__4080608__0__-4__GTCT__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-8	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GTCT
JC	112		REL606	1432635	-1	REL606	2349171	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1432635__0__REL606__2349171__1__0____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=17	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	567		REL606	1450338	1	REL606	2344401	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1450338__1__REL606__2344401__0__-1__C__36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	58		REL606	1460160	1	REL606	3742143	1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1460158__1__REL606__3742143__1__2____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=26	max_min_left=14	max_min_left_minus=14	max_min_left_plus=12	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=31	min_overlap_score=172	pos_hash_score=16	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=18	total_reads=21
JC	42		REL606	1462320	1	REL606	3893554	1	0	alignment_overlap=3	coverage_minus=10	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__1462318__1__REL606__3893553__1__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=30	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=15	max_min_right_minus=9	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=30	min_overlap_score=198	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=26	total_reads=27
JC	544		REL606	1463033	-1	REL606	1463035	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1463033__0__REL606__1463035__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	270		REL606	1466929	-1	REL606	3293466	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1466929__0__REL606__3293466__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	591		REL606	1472356	-1	REL606	2819611	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1472356__0__REL606__2819611__0__-3__CCG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCG
JC	114		REL606	1484244	-1	REL606	3682602	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1484244__0__REL606__3682602__0__-6__ATATGA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=35	max_right_minus=15	max_right_plus=35	min_overlap_score=5	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=ATATGA
JC	534		REL606	1484640	1	REL606	3104248	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1484640__1__REL606__3104248__0__-3__CTG__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTG
JC	110		REL606	1507550	1	REL606	1677836	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1507550__1__REL606__1677836__0__0____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=32	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	142		REL606	1509857	-1	REL606	1714052	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1509857__0__REL606__1714052__1__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	138		REL606	1511301	1	REL606	4003919	1	-3	alignment_overlap=-3	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1511301__1__REL606__4003919__1__-3__CAT__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-3	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CAT
JC	376		REL606	1511578	-1	REL606	3310660	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1511578__0__REL606__3310660__0__-5__CGACT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGACT
JC	498		REL606	1518932	-1	REL606	3723287	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1518932__0__REL606__3723287__1__-1__T__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	437		REL606	1522865	1	REL606	4253494	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1522865__1__REL606__4253494__0__-6__CCCGTT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCCGTT
JC	72		REL606	1524735	-1	REL606	2338209	-1	0	alignment_overlap=7	coverage_minus=9	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1524735__0__REL606__2338216__0__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=26	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	216		REL606	1530126	1	REL606	2560364	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1530126__1__REL606__2560364__1__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	205		REL606	1533032	-1	REL606	2576401	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1533032__0__REL606__2576401__0__-5__GTCAG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTCAG
JC	563		REL606	1534550	-1	REL606	3425681	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1534550__0__REL606__3425681__0__-5__ACGGC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACGGC
JC	516		REL606	1539861	1	REL606	4409686	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1539861__1__REL606__4409689__0__3____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	200		REL606	1542466	-1	REL606	2791539	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1542466__0__REL606__2791539__0__-2__GA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=14	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GA
JC	539		REL606	1545492	-1	REL606	2084061	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1545492__0__REL606__2084061__1__-3__ATC__36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATC
JC	137		REL606	1547431	-1	REL606	3988470	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1547431__0__REL606__3988470__1__-5__GGCGG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=24	max_right_minus=15	max_right_plus=24	min_overlap_score=20	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GGCGG
JC	191		REL606	1556370	1	REL606	4503695	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1556370__1__REL606__4503695__1__-2__GG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=14	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GG
JC	79		REL606	1558800	1	REL606	3574411	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__1558800__1__REL606__3574422__0__11____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=22	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	84		REL606	1578713	-1	REL606	3230222	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__1578713__0__REL606__3230231__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=18	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	133		REL606	1583500	1	REL606	3172516	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1583500__1__REL606__3172516__0__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=19	pos_hash_score=2	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	371		REL606	1593170	1	REL606	3727959	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1593170__1__REL606__3727959__0__0____36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	584		REL606	1593760	1	REL606	2881079	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1593760__1__REL606__2881080__0__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	404		REL606	1607826	1	REL606	2917872	1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1607826__1__REL606__2917872__1__-6__AGAAGA__36__36__1__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=-3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGAAGA
JC	469		REL606	1617108	1	REL606	1617109	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1617108__1__REL606__1617109__1__0____36__36__0__0	max_left=21	max_left_minus=0	max_left_plus=21	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	113		REL606	1630743	1	REL606	1663910	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1630743__1__REL606__1663910__0__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=10	max_min_left_minus=10	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=39	pos_hash_score=2	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	603		REL606	1647536	1	REL606	3241004	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1647536__1__REL606__3241004__1__-2__GC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	240		REL606	1648315	-1	REL606	3956179	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1648315__0__REL606__3956176__1__3____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	598		REL606	1649031	1	REL606	2766002	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1649031__1__REL606__2766002__0__-3__GGT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGT
JC	303		REL606	1670878	-1	REL606	2842004	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1670878__0__REL606__2842004__1__-4__NGGC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=NGGC
JC	239		REL606	1672826	1	REL606	4312454	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1672826__1__REL606__4312454__0__-2__AC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AC
JC	275		REL606	1673304	-1	REL606	4350522	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1673304__0__REL606__4350520__1__2____36__36__0__0	max_left=11	max_left_minus=11	max_left_plus=0	max_min_left=11	max_min_left_minus=11	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	401		REL606	1686258	-1	REL606	2951697	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1686258__0__REL606__2951699__0__2____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	540		REL606	1689172	1	REL606	4509273	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1689172__1__REL606__4509273__0__0____36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	319		REL606	1691867	1	REL606	2651164	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1691867__1__REL606__2651164__0__-5__GCGCG__36__36__0__1	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCGCG
JC	487		REL606	1693691	1	REL606	1896925	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1693691__1__REL606__1896925__0__0____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	95		REL606	1695844	-1	REL606	2867529	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1695844__0__REL606__2867529__0__0____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=8	max_min_left_minus=8	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=41	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	257		REL606	1698754	1	REL606	3441488	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1698754__1__REL606__3441488__1__-3__GGC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGC
JC	283		REL606	1709473	-1	REL606	4091523	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1709473__0__REL606__4091523__0__-1__A__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	434		REL606	1713929	-1	REL606	3589593	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1713929__0__REL606__3589593__0__-2__AA__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AA
JC	449		REL606	1714388	-1	REL606	3471908	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1714388__0__REL606__3471908__1__-2__GC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	512		REL606	1715261	-1	REL606	4340452	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1715261__0__REL606__4340452__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	378		REL606	1721933	-1	REL606	2743112	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1721933__0__REL606__2743115__0__3____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	299		REL606	1727166	-1	REL606	3179826	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1727166__0__REL606__3179826__0__-6__TGTGTG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGTGTG
JC	27		REL606	1731497	1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=15	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__1731495__1__REL606__3651090__1__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=27	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=32	max_right_minus=29	max_right_plus=32	min_overlap_score=278	pos_hash_score=28	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=33	total_reads=33
JC	144		REL606	1736917	1	REL606	4004123	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1736917__1__REL606__4004115__1__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	220		REL606	1746613	1	REL606	3232629	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1746613__1__REL606__3232629__0__-1__G__36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	328		REL606	1749279	1	REL606	2158721	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1749279__1__REL606__2158721__0__-5__GCGGG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCGGG
JC	419		REL606	1765788	1	REL606	3057069	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1765788__1__REL606__3057070__0__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	124		REL606	1772495	-1	REL606	2188745	1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1772495__0__REL606__2188740__1__5____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=24	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	295		REL606	1776475	1	REL606	3479329	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1776475__1__REL606__3479329__1__-4__CCAG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCAG
JC	329		REL606	1778734	1	REL606	2673116	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1778734__1__REL606__2673116__0__-6__GACGGG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GACGGG
JC	582		REL606	1800684	-1	REL606	2845213	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1800684__0__REL606__2845214__0__1____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	348		REL606	1801980	1	REL606	4361468	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1801980__1__REL606__4361468__0__-2__GG__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GG
JC	146		REL606	1808479	-1	REL606	3534598	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1808479__0__REL606__3534598__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=23	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	346		REL606	1811845	-1	REL606	4123649	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1811845__0__REL606__4123648__1__1____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	224		REL606	1813459	1	REL606	3751219	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1813459__1__REL606__3751219__1__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	389		REL606	1823855	-1	REL606	3521110	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1823855__0__REL606__3521110__0__-1__G__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	490		REL606	1829547	1	REL606	2983030	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1829547__1__REL606__2983030__1__-1__G__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	383		REL606	1851988	1	REL606	4215213	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1851988__1__REL606__4215213__1__-1__G__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	477		REL606	1865177	1	REL606	2902784	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1865177__1__REL606__2902784__0__-5__GACCG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GACCG
JC	96		REL606	1867900	-1	REL606	3367500	1	0	alignment_overlap=5	coverage_minus=5	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1867900__0__REL606__3367495__1__5____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=41	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	427		REL606	1868549	-1	REL606	2072329	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1868549__0__REL606__2072329__0__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	173		REL606	1868707	-1	REL606	4585694	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1868707__0__REL606__4585694__0__-4__CAAA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=17	max_right_plus=35	min_overlap_score=12	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CAAA
JC	305		REL606	1881441	1	REL606	2527543	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1881441__1__REL606__2527543__1__-6__GCTGGG__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCTGGG
JC	128		REL606	1881779	-1	REL606	2207321	1	-6	alignment_overlap=-6	coverage_minus=2	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1881779__0__REL606__2207321__1__-6__CGAACC__36__36__0__0	max_left=14	max_left_minus=14	max_left_plus=13	max_min_left=13	max_min_left_minus=13	max_min_left_plus=13	max_min_right=12	max_min_right_minus=12	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=14	min_overlap_score=38	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=CGAACC
JC	163		REL606	1885220	-1	REL606	3262137	-1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1885220__0__REL606__3262137__0__-5__GTTGA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=28	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GTTGA
JC	365		REL606	1888051	-1	REL606	2465397	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1888051__0__REL606__2465397__0__0____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=17	max_min_left_minus=17	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	254		REL606	1894271	1	REL606	2373793	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1894271__1__REL606__2373793__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	81		REL606	1902029	1	REL606	3008630	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__1902029__1__REL606__3008622__1__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=30	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	409		REL606	1910414	1	REL606	4022259	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1910414__1__REL606__4022259__1__-3__CCT__36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCT
JC	470		REL606	1913138	1	REL606	1913140	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1913138__1__REL606__1913140__1__0____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	558		REL606	1919236	-1	REL606	3358205	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1919236__0__REL606__3358205__0__-6__GGGGGC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGGGGC
JC	488		REL606	1919238	-1	REL606	3358204	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1919238__0__REL606__3358204__0__-5__GGGCC__36__36__1__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGGCC
JC	196		REL606	1921093	-1	REL606	4098161	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1921093__0__REL606__4098161__0__-4__TGTG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=29	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TGTG
JC	150		REL606	1922794	1	REL606	1923084	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1922794__1__REL606__1923085__0__1____36__36__0__0	max_left=28	max_left_minus=27	max_left_plus=28	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=5	max_min_right_plus=7	max_right=7	max_right_minus=5	max_right_plus=7	min_overlap_score=12	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	551		REL606	1922998	-1	REL606	3560734	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1922998__0__REL606__3560733__1__1____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	255		REL606	1923268	-1	REL606	4552422	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1923268__0__REL606__4552422__0__-6__CGATCG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGATCG
JC	280		REL606	1932090	-1	REL606	2233154	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1932090__0__REL606__2233154__1__-4__GGGC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGGC
JC	372		REL606	1934137	1	REL606	2684179	1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1934137__1__REL606__2684174__1__5____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	266		REL606	1935107	-1	REL606	3144476	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1935107__0__REL606__3144476__1__-3__GCG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCG
JC	452		REL606	1938836	1	REL606	2753149	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1938836__1__REL606__2753149__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	218		REL606	1945919	-1	REL606	4381355	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1945919__0__REL606__4381355__1__-2__AC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AC
JC	549		REL606	1950855	1	REL606	2868120	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1950855__1__REL606__2868120__0__0____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	159		REL606	1955716	1	REL606	4118648	-1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1955716__1__REL606__4118652__0__4____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=20	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	522		REL606	1956477	1	REL606	4488104	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1956477__1__REL606__4488104__0__-1__G__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	88		REL606	1991772	1	REL606	4324341	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1991772__1__REL606__4324341__1__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=38	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	214		REL606	2002683	1	REL606	2291770	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2002683__1__REL606__2291770__0__-2__GG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GG
JC	339		REL606	2002790	1	REL606	2262376	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2002790__1__REL606__2262376__0__-1__C__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	301		REL606	2008786	-1	REL606	3100994	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2008786__0__REL606__3100996__0__2____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	70		REL606	2017667	-1	REL606	3304286	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__2017667__0__REL606__3304276__1__10____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=38	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	407		REL606	2022792	-1	REL606	4431865	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2022792__0__REL606__4431865__1__0____36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	164		REL606	2024864	1	REL606	2510084	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2024864__1__REL606__2510084__0__-6__TAACAG__36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=10	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TAACAG
JC	236		REL606	2027024	1	REL606	4520064	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2027024__1__REL606__4520064__0__0____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=17	max_min_left_minus=17	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	430		REL606	2030683	1	REL606	2696572	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2030683__1__REL606__2696572__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	318		REL606	2051429	1	REL606	4287967	1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2051429__1__REL606__4287967__1__-5__ACTAC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACTAC
JC	279		REL606	2057433	-1	REL606	2177585	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2057433__0__REL606__2177585__1__-5__GNATG__36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GNATG
JC	439		REL606	2064224	1	REL606	3438488	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2064224__1__REL606__3438488__1__-3__GCG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCG
JC	292		REL606	2070412	1	REL606	3561156	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2070412__1__REL606__3561156__0__-2__CT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CT
JC	475		REL606	2076116	-1	REL606	2780957	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2076116__0__REL606__2780957__1__-5__GGTTT__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGTTT
JC	391		REL606	2079810	1	REL606	3785266	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2079812__1__REL606__3785266__1__2____36__36__1__0	max_left=29	max_left_minus=29	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=17	max_right_minus=5	max_right_plus=17	min_overlap_score=21	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	367		REL606	2080526	-1	REL606	4077552	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2080526__0__REL606__4077552__0__0____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	28		REL606	2086596	-1	REL606	3652533	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__2086596__0__REL606__3652534__0__1____36__36__1__1	max_left=34	max_left_minus=33	max_left_plus=34	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=33	min_overlap_score=247	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=30	total_reads=33
JC	12		REL606	2128600	1	REL606	4561283	1	0	alignment_overlap=4	coverage_minus=17	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__2128596__1__REL606__4561283__1__4____36__36__1__0	max_left=30	max_left_minus=28	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=16	max_min_right_minus=14	max_min_right_plus=16	max_right=31	max_right_minus=30	max_right_plus=31	min_overlap_score=270	pos_hash_score=26	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=4	side_2_redundant=0	total_non_overlap_reads=33	total_reads=53
JC	111		REL606	2133519	-1	REL606	3595207	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__2133519__0__REL606__3595207__1__-3__GGG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=22	max_right_minus=0	max_right_plus=22	min_overlap_score=40	pos_hash_score=2	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GGG
JC	370		REL606	2135803	-1	REL606	2281647	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2135803__0__REL606__2281647__0__-6__ATCGCC__36__36__0__1	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATCGCC
JC	559		REL606	2150289	1	REL606	4473275	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2150289__1__REL606__4473276__0__1____36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	353		REL606	2157400	-1	REL606	3937987	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2157400__0__REL606__3937987__1__0____36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	117		REL606	2160242	1	REL606	3160961	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2160242__1__REL606__3160961__1__0____36__36__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=21	max_right_minus=21	max_right_plus=0	min_overlap_score=20	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	74		REL606	2169886	-1	REL606	2170092	-1	0	alignment_overlap=8	coverage_minus=8	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2169886__0__REL606__2170100__0__8____36__36__0__0	max_left=23	max_left_minus=23	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=33	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	599		REL606	2178798	1	REL606	4531786	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2178798__1__REL606__4531786__0__-4__TGGA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGGA
JC	606		REL606	2183237	-1	REL606	3369873	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2183237__0__REL606__3369873__0__-3__TGG__36__36__0__0	max_left=14	max_left_minus=14	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGG
JC	446		REL606	2188344	-1	REL606	3179750	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2188344__0__REL606__3179750__0__-6__ATTTCG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATTTCG
JC	87		REL606	2188458	-1	REL606	4372717	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__2188458__0__REL606__4372719__0__2____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=23	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	537		REL606	2193198	-1	REL606	4258001	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2193198__0__REL606__4258002__0__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	321		REL606	2193533	1	REL606	3706852	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2193533__1__REL606__3706852__1__-1__A__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	399		REL606	2198433	-1	REL606	3992055	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2198433__0__REL606__3992055__1__-5__GTGAC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTGAC
JC	174		REL606	2205511	1	REL606	4562513	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2205511__1__REL606__4562513__1__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=16	max_right_minus=1	max_right_plus=16	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	309		REL606	2211977	1	REL606	4611052	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2211977__1__REL606__4611052__1__-2__AT__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AT
JC	593		REL606	2231966	-1	REL606	3543734	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2231966__0__REL606__3543734__0__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	231		REL606	2241779	-1	REL606	2445176	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2241779__0__REL606__2445176__1__-5__TTCAT__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTCAT
JC	435		REL606	2257598	-1	REL606	3486741	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2257598__0__REL606__3486741__0__-3__AGG__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGG
JC	312		REL606	2263696	1	REL606	3144235	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2263696__1__REL606__3144235__0__0____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=21	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	90		REL606	2273134	1	REL606	3439421	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__2273134__1__REL606__3439409__1__12____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=19	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	511		REL606	2281478	1	REL606	4588545	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2281478__1__REL606__4588545__0__-2__AG__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AG
JC	536		REL606	2282051	1	REL606	3113113	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2282051__1__REL606__3113113__0__-1__T__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	423		REL606	2298790	1	REL606	2391522	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2298790__1__REL606__2391522__1__-3__GCG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCG
JC	589		REL606	2337815	1	REL606	4559440	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2337815__1__REL606__4559440__1__-3__AAG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AAG
JC	64		REL606	2338216	-1	REL606	4060789	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__2338216__0__REL606__4060782__1__7____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=34	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=14	total_reads=14
JC	463		REL606	2348305	-1	REL606	4288618	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2348305__0__REL606__4288618__0__-4__AATG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AATG
JC	75		REL606	2376093	-1	REL606	3550484	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__2376093__0__REL606__3550483__1__1____36__36__0__1	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=51	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=8	total_reads=8
JC	386		REL606	2378509	1	REL606	3909984	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2378509__1__REL606__3909984__0__-2__CT__36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CT
JC	486		REL606	2379800	1	REL606	2593639	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2379800__1__REL606__2593639__0__-5__CGCAG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGCAG
JC	245		REL606	2386489	1	REL606	2595033	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2386489__1__REL606__2595033__0__0____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	375		REL606	2387419	1	REL606	2539522	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2387419__1__REL606__2539520__1__2____36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	448		REL606	2395276	1	REL606	2395279	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2395276__1__REL606__2395279__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	251		REL606	2405709	-1	REL606	2727996	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2405709__0__REL606__2727996__1__-3__ATC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATC
JC	246		REL606	2409084	-1	REL606	4312380	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2409084__0__REL606__4312380__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	222		REL606	2412157	1	REL606	4009206	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2412157__1__REL606__4009206__1__-4__CTCC__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=-3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTCC
JC	282		REL606	2413373	1	REL606	4430088	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2413373__1__REL606__4430088__0__-6__TCCGGT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TCCGGT
JC	234		REL606	2424595	-1	REL606	2424605	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2424595__0__REL606__2424605__0__-2__CG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	71		REL606	2425297	1	REL606	4180912	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__2425297__1__REL606__4180912__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=125	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	247		REL606	2441784	-1	REL606	3990188	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2441784__0__REL606__3990188__0__-5__CGGAT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGGAT
JC	171		REL606	2458359	1	REL606	3616699	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__2458359__1__REL606__3616699__1__-1__C__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=C
JC	304		REL606	2464939	1	REL606	3535430	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2464939__1__REL606__3535429__1__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	431		REL606	2465737	1	REL606	3330642	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2465737__1__REL606__3330642__1__-3__CCA__36__36__0__1	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=0	max_right_plus=31	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCA
JC	604		REL606	2468564	-1	REL606	2728990	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2468564__0__REL606__2728990__0__-2__AT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AT
JC	520		REL606	2469648	1	REL606	3993485	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2469648__1__REL606__3993485__0__-2__GG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GG
JC	204		REL606	2488870	1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2488870__1__REL606__2583282__0__0____36__36__1__0	max_left=30	max_left_minus=0	max_left_plus=30	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_right=2	max_right_minus=0	max_right_plus=2	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	428		REL606	2494585	-1	REL606	3814115	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2494585__0__REL606__3814115__0__-6__CGCCAG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGCCAG
JC	362		REL606	2513043	1	REL606	4369374	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2513043__1__REL606__4369374__0__-3__ANG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ANG
JC	579		REL606	2518335	1	REL606	3187035	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2518335__1__REL606__3187035__1__-3__CTG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTG
JC	135		REL606	2532570	1	REL606	3090923	-1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2532570__1__REL606__3090923__0__-5__CTGAT__36__36__1__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-8	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CTGAT
JC	253		REL606	2539520	1	REL606	4603881	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2539520__1__REL606__4603883__0__2____36__36__0__1	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	201		REL606	2540011	-1	REL606	3982736	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2540011__0__REL606__3982736__0__0____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	284		REL606	2550728	-1	REL606	2985640	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2550728__0__REL606__2985640__1__-2__GA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GA
JC	333		REL606	2552866	1	REL606	2914559	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2552866__1__REL606__2914559__0__-3__GCC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCC
JC	77		REL606	2555219	-1	REL606	3318114	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__2555219__0__REL606__3318114__0__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=35	max_right_minus=1	max_right_plus=35	min_overlap_score=27	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	324		REL606	2567097	-1	REL606	3105021	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2567097__0__REL606__3105021__0__-6__CACGTA__36__36__1__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CACGTA
JC	258		REL606	2583282	-1	REL606	4603825	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2583282__0__REL606__4603825__0__0____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=12	max_min_right_plus=0	max_right=12	max_right_minus=12	max_right_plus=0	min_overlap_score=12	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	285		REL606	2583282	-1	REL606	3319969	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2583282__0__REL606__3319969__1__0____36__36__0__1	max_left=14	max_left_minus=14	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=21	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	313		REL606	2587206	-1	REL606	3451708	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2587206__0__REL606__3451708__1__-3__TAT__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TAT
JC	465		REL606	2604463	-1	REL606	4611432	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2604463__0__REL606__4611434__0__2____36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	36		REL606	2655781	1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=19	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__2655779__1__REL606__3651090__1__3____36__36__0__1	max_left=29	max_left_minus=29	max_left_plus=27	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=11	max_right=31	max_right_minus=29	max_right_plus=31	min_overlap_score=269	pos_hash_score=23	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=27	total_reads=29
JC	26		REL606	2655783	-1	REL606	2774435	1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__2655784__0__REL606__2774434__1__2____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=26	max_min_left=15	max_min_left_minus=15	max_min_left_plus=12	max_min_right=17	max_min_right_minus=12	max_min_right_plus=17	max_right=31	max_right_minus=30	max_right_plus=31	min_overlap_score=278	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=30	total_reads=33
JC	495		REL606	2672383	1	REL606	2872902	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2672383__1__REL606__2872901__1__1____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	535		REL606	2679123	1	REL606	3635045	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2679123__1__REL606__3635045__0__-5__CAGCA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAGCA
JC	581		REL606	2687674	-1	REL606	4074070	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2687674__0__REL606__4074070__1__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	459		REL606	2689153	-1	REL606	2909460	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2689153__0__REL606__2909460__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	166		REL606	2704284	-1	REL606	3221971	-1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2704284__0__REL606__3221971__0__-5__GTGGG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=12	max_min_left_minus=12	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=27	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GTGGG
JC	213		REL606	2706025	-1	REL606	3297936	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2706025__0__REL606__3297936__0__-3__CGT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGT
JC	263		REL606	2729710	-1	REL606	3535432	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2729710__0__REL606__3535432__0__-5__GTCTA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTCTA
JC	310		REL606	2732752	-1	REL606	2881558	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2732752__0__REL606__2881558__1__-4__TCAT__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TCAT
JC	158		REL606	2748095	-1	REL606	4007653	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2748095__0__REL606__4007653__1__-1__A__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=32	max_right_minus=17	max_right_plus=32	min_overlap_score=20	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=A
JC	460		REL606	2752059	-1	REL606	2939012	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2752059__0__REL606__2939012__0__-4__ACTG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACTG
JC	607		REL606	2771850	-1	REL606	3408792	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2771850__0__REL606__3408792__0__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	41		REL606	2774435	1	REL606	2877313	1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__2774432__1__REL606__2877312__1__4____36__36__1__0	max_left=27	max_left_minus=27	max_left_plus=27	max_min_left=15	max_min_left_minus=4	max_min_left_plus=15	max_min_right=15	max_min_right_minus=13	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=29	min_overlap_score=107	pos_hash_score=14	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=16	total_reads=27
JC	54		REL606	2774435	1	REL606	2899617	-1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__2774434__1__REL606__2899617__0__1____36__36__0__1	max_left=29	max_left_minus=29	max_left_plus=28	max_min_left=17	max_min_left_minus=11	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=28	min_overlap_score=213	pos_hash_score=18	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=23	total_reads=24
JC	15		REL606	2775877	-1	REL606	3680782	-1	0	alignment_overlap=3	coverage_minus=20	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__2775878__0__REL606__3680784__0__3____36__36__0__1	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=29	max_right_minus=29	max_right_plus=28	min_overlap_score=316	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=38	total_reads=44
JC	18		REL606	2775877	-1	REL606	2877315	-1	0	alignment_overlap=4	coverage_minus=16	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__2775881__0__REL606__2877315__0__4____36__36__1__1	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=9	max_min_left_minus=9	max_min_left_plus=7	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=29	min_overlap_score=170	pos_hash_score=20	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=4	side_2_redundant=1	total_non_overlap_reads=27	total_reads=42
JC	443		REL606	2806218	-1	REL606	3805321	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2806218__0__REL606__3805325__0__4____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	219		REL606	2832321	-1	REL606	4573235	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2832321__0__REL606__4573235__0__-3__ACG__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACG
JC	181		REL606	2849707	1	REL606	3412047	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__2849707__1__REL606__3412047__0__-1__C__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=17	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=C
JC	326		REL606	2855117	1	REL606	4044055	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2855117__1__REL606__4044055__0__0____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	552		REL606	2857603	1	REL606	4236874	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2857603__1__REL606__4236874__0__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	264		REL606	2860778	-1	REL606	4386929	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2860778__0__REL606__4386929__0__-6__GGTGCG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGTGCG
JC	492		REL606	2866956	1	REL606	3448846	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2866956__1__REL606__3448846__0__-6__ATGGNC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATGGNC
JC	151		REL606	2896716	-1	REL606	4590414	1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2896716__0__REL606__4590414__1__-5__ACAGA__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=28	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=ACAGA
JC	73		REL606	2914723	1	REL606	4560489	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2914723__1__REL606__4560489__0__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=64	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	408		REL606	2926105	-1	REL606	4142881	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2926105__0__REL606__4142881__0__-4__CACT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CACT
JC	241		REL606	2928536	1	REL606	4488554	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2928536__1__REL606__4488554__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	315		REL606	2928743	-1	REL606	4213282	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2928743__0__REL606__4213282__0__-1__A__36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	476		REL606	2934159	-1	REL606	2978179	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2934159__0__REL606__2978179__0__-5__TAATC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TAATC
JC	229		REL606	2980632	1	REL606	3429637	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2980632__1__REL606__3429637__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	587		REL606	2986167	1	REL606	3569433	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2986167__1__REL606__3569433__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	543		REL606	2992519	-1	REL606	4050532	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2992519__0__REL606__4050531__1__1____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	169		REL606	2995741	-1	REL606	4437398	1	-7	alignment_overlap=-7	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2995741__0__REL606__4437398__1__-7__GCACGCA__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=28	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GCACGCA
JC	199		REL606	3000172	1	REL606	3574683	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__3000172__1__REL606__3574683__0__-3__TAC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=30	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TAC
JC	30		REL606	3015773	-1	REL606	3652533	-1	0	alignment_overlap=3	coverage_minus=10	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__3015774__0__REL606__3652535__0__3____36__36__0__0	max_left=31	max_left_minus=26	max_left_plus=31	max_min_left=14	max_min_left_minus=13	max_min_left_plus=14	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=238	pos_hash_score=21	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=25	total_reads=31
JC	56		REL606	3035123	1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=15	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__3035121__1__REL606__3651090__1__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=13	max_min_left_plus=16	max_min_right=15	max_min_right_minus=15	max_min_right_plus=13	max_right=30	max_right_minus=28	max_right_plus=30	min_overlap_score=204	pos_hash_score=20	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=23	total_reads=23
JC	307		REL606	3058944	-1	REL606	3965025	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3058944__0__REL606__3965025__0__-2__CG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	267		REL606	3064500	-1	REL606	3792547	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3064500__0__REL606__3792547__0__-4__AGTG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGTG
JC	203		REL606	3085543	1	REL606	3499645	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3085543__1__REL606__3499645__0__-5__GGTTG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGTTG
JC	161		REL606	3088354	1	REL606	3203973	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__3088354__1__REL606__3203973__0__-6__CCTGCT__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=29	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CCTGCT
JC	494		REL606	3110783	-1	REL606	3936802	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3110783__0__REL606__3936802__0__-6__GCACGC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCACGC
JC	208		REL606	3115527	-1	REL606	4018089	-1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3115527__0__REL606__4018093__0__4____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	140		REL606	3150221	1	REL606	4603814	-1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__4603825__0__11____36__36__0__0	max_left=13	max_left_minus=13	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	212		REL606	3150221	1	REL606	4224136	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__4224147__0__11____36__36__0__1	max_left=3	max_left_minus=0	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	360		REL606	3150221	1	REL606	4198097	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__4198108__0__11____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	382		REL606	3155827	-1	REL606	3645813	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3155827__0__REL606__3645813__1__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	289		REL606	3182963	-1	REL606	3956447	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3182963__0__REL606__3956447__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	555		REL606	3189622	-1	REL606	3371829	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3189622__0__REL606__3371829__0__-5__GAAAC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GAAAC
JC	44		REL606	3192747	-1	REL606	3651091	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__3192747__0__REL606__3651090__1__1____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=14	max_min_left_minus=13	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=14	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=174	pos_hash_score=23	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=26	total_reads=27
JC	400		REL606	3221420	1	REL606	3439409	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3221420__1__REL606__3439409__1__-3__CGG__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGG
JC	583		REL606	3228727	1	REL606	3727612	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3228727__1__REL606__3727612__1__-2__CC__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CC
JC	25		REL606	3260564	-1	REL606	3260571	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__3260564__0__REL606__3260571__1__0____36__36__0__0	max_left=28	max_left_minus=27	max_left_plus=28	max_min_left=16	max_min_left_minus=12	max_min_left_plus=16	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=32	max_right_minus=27	max_right_plus=32	min_overlap_score=272	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=24	total_reads=33
JC	232		REL606	3263510	1	REL606	3343267	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3263510__1__REL606__3343266__1__1____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	35		REL606	3268054	-1	REL606	3651091	1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__3268054__0__REL606__3651090__1__1____36__36__0__1	max_left=32	max_left_minus=29	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=256	pos_hash_score=21	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=28	total_reads=29
JC	227		REL606	3278770	-1	REL606	4590595	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3278770__0__REL606__4590595__0__0____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	193		REL606	3279785	-1	REL606	3855588	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3279785__0__REL606__3855596__0__8____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=14	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	527		REL606	3320284	-1	REL606	4264317	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3320284__0__REL606__4264317__0__0____36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	148		REL606	3391067	1	REL606	4300578	1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3391067__1__REL606__4300578__1__-2__CA__36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=18	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=CA
JC	424		REL606	3393051	-1	REL606	3476307	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3393051__0__REL606__3476307__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	238		REL606	3406973	1	REL606	4347688	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3406973__1__REL606__4347688__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	530		REL606	3417171	-1	REL606	4374511	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3417171__0__REL606__4374511__0__-5__TGTCC__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGTCC
JC	153		REL606	3431277	-1	REL606	3504022	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3431277__0__REL606__3504019__1__3____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=25	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	223		REL606	3446565	-1	REL606	4570533	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3446565__0__REL606__4570533__0__-1__A__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=30	max_right_plus=0	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	597		REL606	3455417	-1	REL606	3545512	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3455417__0__REL606__3545512__0__-4__GACA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GACA
JC	541		REL606	3469753	-1	REL606	4034319	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3469753__0__REL606__4034319__0__-1__G__36__36__0__0	max_left=9	max_left_minus=9	max_left_plus=0	max_min_left=9	max_min_left_minus=9	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=25	max_right_plus=0	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	338		REL606	3476307	1	REL606	4276391	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3476307__1__REL606__4276391__1__-1__G__36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	569		REL606	3480679	1	REL606	4280609	-1	-6	alignment_overlap=-6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3480679__1__REL606__4280609__0__-6__TTTTGA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTTTGA
JC	297		REL606	3484793	-1	REL606	3800588	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3484793__0__REL606__3800588__1__0____36__36__0__0	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	207		REL606	3485196	-1	REL606	4058005	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3485196__0__REL606__4058005__0__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	136		REL606	3503712	-1	REL606	3572089	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3503712__0__REL606__3572089__1__0____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=16	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	197		REL606	3519458	-1	REL606	4496085	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__3519458__0__REL606__4496088__0__3____36__36__0__0	max_left=31	max_left_minus=0	max_left_plus=31	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=0	max_min_right_plus=4	max_right=4	max_right_minus=0	max_right_plus=4	min_overlap_score=4	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	185		REL606	3548166	-1	REL606	3630125	-1	-5	alignment_overlap=-5	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3548166__0__REL606__3630125__0__-5__TATTT__36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=11	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TATTT
JC	235		REL606	3550430	-1	REL606	4467982	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3550430__0__REL606__4467982__1__-2__CA__36__36__1__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CA
JC	206		REL606	3562216	1	REL606	4182242	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3562216__1__REL606__4182243__0__1____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=17	max_min_left_minus=17	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	595		REL606	3567759	-1	REL606	3889418	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3567759__0__REL606__3889418__1__-4__CGAT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGAT
JC	580		REL606	3603902	-1	REL606	3603933	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__3603902__0__REL606__3603943__0__10____36__36__1__1	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=0	max_min_right_plus=5	max_right=5	max_right_minus=0	max_right_plus=5	min_overlap_score=13	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=10	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=3	total_reads=1
JC	198		REL606	3619846	1	REL606	4173398	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3619846__1__REL606__4173397__1__1____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=20	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	557		REL606	3642896	-1	REL606	4272203	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3642896__0__REL606__4272203__0__0____36__36__0__0	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	8		REL606	3651091	1	REL606	4415710	1	0	alignment_overlap=1	coverage_minus=24	coverage_plus=23	flanking_left=36	flanking_right=36	key=REL606__3651090__1__REL606__4415710__1__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=17	max_min_right_minus=15	max_min_right_plus=17	max_right=34	max_right_minus=32	max_right_plus=34	min_overlap_score=400	pos_hash_score=36	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=47	total_reads=64
JC	50		REL606	3651091	1	REL606	4110237	1	0	alignment_overlap=3	coverage_minus=13	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__3651090__1__REL606__4110235__1__3____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=26	max_min_left=14	max_min_left_minus=14	max_min_left_plus=13	max_min_right=15	max_min_right_minus=13	max_min_right_plus=15	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=228	pos_hash_score=20	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=24	total_reads=25
JC	9		REL606	3652533	-1	REL606	4613020	1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=26	flanking_left=36	flanking_right=36	key=REL606__3652534__0__REL606__4613019__1__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=14	max_min_left_minus=11	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=357	pos_hash_score=29	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=43	total_reads=59
JC	31		REL606	3652533	-1	REL606	3680780	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__3652534__0__REL606__3680780__1__1____36__36__1__0	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=15	max_min_left_minus=15	max_min_left_plus=12	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=241	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=30	total_reads=31
JC	45		REL606	3652533	-1	REL606	4333228	1	0	alignment_overlap=3	coverage_minus=6	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__3652536__0__REL606__4333228__1__3____36__36__1__0	max_left=32	max_left_minus=22	max_left_plus=32	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=27	max_right_minus=27	max_right_plus=27	min_overlap_score=210	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=23	total_reads=27
JC	316		REL606	3662426	-1	REL606	4592142	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3662426__0__REL606__4592142__0__-3__CGC__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGC
JC	502		REL606	3740114	-1	REL606	4206756	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3740114__0__REL606__4206756__0__-6__ATCTGT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATCTGT
JC	123		REL606	3766798	-1	REL606	4520477	-1	-6	alignment_overlap=-6	coverage_minus=2	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3766798__0__REL606__4520477__0__-6__GGCTGG__36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=15	max_min_left=11	max_min_left_minus=11	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=12	max_right_plus=15	min_overlap_score=22	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GGCTGG
JC	288		REL606	3811850	1	REL606	4344491	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3811850__1__REL606__4344491__0__-5__TAACA__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TAACA
JC	176		REL606	3823492	-1	REL606	4109684	1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3823492__0__REL606__4109684__1__-4__GTAC__36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=14	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=GTAC
JC	99		REL606	3838341	-1	REL606	4033760	-1	0	alignment_overlap=11	coverage_minus=4	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3838341__0__REL606__4033771__0__11____36__36__0__0	max_left=22	max_left_minus=22	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=17	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	131		REL606	3847249	-1	REL606	3992340	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__3847249__0__REL606__3992340__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=0	max_right_plus=31	min_overlap_score=21	pos_hash_score=2	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	106		REL606	3855604	1	REL606	4345337	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__3855604__1__REL606__4345329__1__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=18	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	32		REL606	3894996	-1	REL606	4588156	1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__3894997__0__REL606__4588156__1__1____36__36__1__0	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=14	max_min_right_minus=9	max_min_right_plus=14	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=230	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=30	total_reads=30
JC	39		REL606	3894996	-1	REL606	3901457	1	0	alignment_overlap=4	coverage_minus=12	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__3894999__0__REL606__3901456__1__4____36__36__1__0	max_left=31	max_left_minus=22	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=14	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=28	min_overlap_score=252	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=28	total_reads=28
JC	417		REL606	3918938	1	REL606	3927120	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3918938__1__REL606__3927120__0__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	317		REL606	3940973	1	REL606	4195273	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3940973__1__REL606__4195273__0__-2__CG__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=0	max_min_right_plus=13	max_right=13	max_right_minus=0	max_right_plus=13	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	107		REL606	3944077	-1	REL606	4456902	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__3944077__0__REL606__4456893__1__9____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=18	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	343		REL606	3945240	-1	REL606	4555515	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3945240__0__REL606__4555515__1__-4__CAGG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAGG
JC	506		REL606	3975233	-1	REL606	4609665	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3975233__0__REL606__4609665__1__-5__CGGAC__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGGAC
JC	94		REL606	3978795	-1	REL606	4579623	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__3978795__0__REL606__4579623__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=40	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	102		REL606	3991883	1	REL606	4278328	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__3991883__1__REL606__4278328__0__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=50	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
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UN	1086		REL606	1625869	1625869
UN	1087		REL606	1625871	1625871
UN	1090		REL606	1684650	1684650
UN	1091		REL606	1684654	1684654
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UN	1095		REL606	1703028	1703028
UN	1096		REL606	1704973	1704974
UN	1101		REL606	1729055	1731496
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UN	1116		REL606	1864380	1864380
UN	1123		REL606	1970064	1970064
UN	1124		REL606	1970068	1970083
UN	1125		REL606	1970085	1970085
UN	1126		REL606	1973301	1974008
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UN	1130		REL606	1994684	1994684
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UN	1133		REL606	1997874	1997903
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UN	1145		REL606	2032309	2032337
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UN	1151		REL606	2032621	2055973
UN	1153		REL606	2063690	2063690
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UN	1171		REL606	2086537	2122425
UN	1172		REL606	2128625	2129344
UN	1174		REL606	2143094	2143805
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UN	1180		REL606	2180424	2180460
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UN	1222		REL606	2453169	2453169
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UN	1225		REL606	2453952	2453979
UN	1226		REL606	2454074	2454103
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UN	1230		REL606	2488895	2488914
UN	1231		REL606	2488920	2488920
UN	1232		REL606	2488992	2489013
UN	1233		REL606	2489020	2489020
UN	1234		REL606	2502470	2502470
UN	1236		REL606	2550468	2550469
UN	1239		REL606	2574203	2574203
UN	1240		REL606	2574492	2574492
UN	1241		REL606	2574495	2574495
UN	1242		REL606	2574501	2574501
UN	1244		REL606	2583083	2583257
UN	1245		REL606	2584969	2584969
UN	1246		REL606	2596153	2596153
UN	1250		REL606	2618054	2618751
UN	1251		REL606	2626574	2626574
UN	1253		REL606	2631769	2631769
UN	1257		REL606	2647251	2647251
UN	1258		REL606	2647577	2647577
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UN	1262		REL606	2652740	2652806
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UN	1264		REL606	2652867	2652867
UN	1266		REL606	2665480	2665480
UN	1268		REL606	2682635	2682635
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UN	1274		REL606	2712802	2712822
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UN	1278		REL606	2713221	2713232
UN	1279		REL606	2713238	2713238
UN	1280		REL606	2713357	2713380
UN	1281		REL606	2713382	2713382
UN	1288		REL606	2772673	2772673
UN	1289		REL606	2772879	2772879
UN	1290		REL606	2772881	2774164
UN	1292		REL606	2774462	2775849
UN	1295		REL606	2791072	2791072
UN	1296		REL606	2795461	2795461
UN	1297		REL606	2795466	2795468
UN	1298		REL606	2812845	2812845
UN	1299		REL606	2822210	2822924
UN	1300		REL606	2842026	2842027
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UN	1314		REL606	2957048	2957086
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UN	1318		REL606	2996034	2996075
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UN	1322		REL606	3010218	3010227
UN	1330		REL606	3015990	3035122
UN	1332		REL606	3040333	3040333
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UN	1343		REL606	3080186	3080205
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UN	1346		REL606	3089801	3089801
UN	1351		REL606	3123903	3123911
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UN	1359		REL606	3192748	3192748
UN	1367		REL606	3253473	3253473
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UN	1371		REL606	3265700	3265706
UN	1372		REL606	3285412	3285412
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UN	1376		REL606	3320178	3320178
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UN	1381		REL606	3349648	3349648
UN	1382		REL606	3351169	3351169
UN	1383		REL606	3351171	3351205
UN	1384		REL606	3351346	3351346
UN	1385		REL606	3351348	3351390
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UN	1388		REL606	3351585	3351647
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UN	1395		REL606	3398100	3398248
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UN	1399		REL606	3399055	3399072
UN	1402		REL606	3405743	3405755
UN	1403		REL606	3433488	3434203
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UN	1405		REL606	3437323	3437323
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UN	1411		REL606	3468518	3468518
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